Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2798 ATGGAACCCCAATCACAATCGCAATCGCAATCGCAATCGCAACTGCAATTGCAAGCTTCTCTTCCTCTTCCACCACCTCCACACATGGATCCCGATGACCCTTCTTCCTCCGTCTGGGACCTCACTTACCTCCTTGACTTCAACCTCGACGACGACGCACCAGTTTTCCCCTTCGATGACAACAACCTCTCAGAAACCCCTCTCACCGACCCTCAGGATCAGGAGGAGGAGACTCACAAGGTCCGAAAGCGTGACCCGATGCTCACATGCCCCAACTTTCTCGCGGGTCGGGTCCCATGCGCATGCCCCGAGATGGACGCGCTACTCGAGGAACAAGGTTTACCCGCCAACAAACGCCCTAGGACCGCACCGTCGGCGGCGCGCTGCCAGGTTCCTGGCTGCGAGGTTGATATCTCTGAGCTCAAGGGCTATCACCGGAGGCACAGGGTTTGTCTGCGCTGTGCAAATGCTCCTACCGTTGTCTTCAACGGCGAGGCTAAGAGATACTGTCAGCAGTGTGGAAAGTTTCATGTTTTGTCGGATTTCGACGAAGGTAAACGGAGCTGTAGAAGGAAGTTGGAGCGCCATAACAACAGGAGGCGAAGGAAGGCTCCGGATTCTAGAGCTGCAGCTGATCATGAACCTCAAGCTGTTACTCAAAATGAAGAGTTCAGTGGTGATCTCGAAGCGGGAAAAGATTGTTCAAATTTGAGTAGTGAGATAGTTGAAAAAGAAGCGTCACCGCCGTCACGGGATCATGAAGAGGAACCTGTTGCTGTTTGGTCGTCAACTCTTGATACACCTAATATTAATGGTGATAGTGTTGTGTCTTTTGTTGCTTCTGGTACTTCAGCACAAGTGAATGGTGTGAATGACGTTTCGAATATTTCTAATTCGCCTCCTTCATATTGCGACAATAAGAGTGCTTATTCGTCTATGTGCCAAACAGGTCGGATTTCATTTAAGCTTTACGACTGGAATCCTGCCGAATTTCCTAGAAGGCTACGGCACCAAATATTCCAATGGTTGGCAAGTATGCCTTTAGAGCTGGAGGGATATATCCGCCCTGGATGTACAATCCTGACAATTTTTATTGCAATGCCTAACATTATGTGGATAAATTTACAAAAGGATCCTCTGTACTATGTGCATGATCTTGTTGCTCCCAGAAAGATGCTATCTGGAAGAGGCACCACACTGGTTCATCTGAATGACATGATGTTCCGTGTTATGAAAGATGGAACTTCTGTGACAAAAGTCGAGGTAAACATGCAGGCACCAAGGCTTCACTATGTTCATCCCACATGCTTTGAAGCTGGCAGACCTATGGAATTTTTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGTTTCTTGTATCTTTCTCTGGGAAGTATCTGAAGTATGATTACTGTGTTCCTTCTCCACATAACTGGTCTGAAGACAATATTTCGTGTGTTAATGATAATCAGTTATACAAGATATATGTCCCTCATACAGATGAATGTCTCTTTGGGCCTGCATTTATTGAGGTGGATAACGAGTCTGGGTTGTCAAACTTTATTCCAGTACTCATTGGGGATAAAGAAATTTGCACTGAAATGAAGACGTTGCAGCAAAAATTAGATGCATCTCTCCCTTCCAAACAGTTCCAGTCTGCATCTGGTGATTCTATTTGCAGCTCATGTGAAGCTCTTGCACATAGACACACAGCTTCATCAGACTTGCTTGTAGATATAGCATGGTTGCTTAAGGACCCCACTTCAGAAAGTTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGTTATCTGTTGGATTTTCTAATATGCAATGATTCAACAATCATTTTGGGAAGAATATTGCCGAATTTGATAATCTTGACAGAAAGCATGAAATCAAATTTTGTGATTAATAGAATCAGTGATATTGACATGACCGAACTACTAAAATGCATGCATAATGCTAGAGATGCCATTTGTCAGAAGCATCGGAAAGATGGAGGTGTAGTTGCACCCTCTGAAATGGAAGACTTTGAAGCAGCTCAGAGCGGCTCCCAAAATAACATGCAATCAGTTGTTGCAGTTAACTATCAGGGTATCCTGCCCGGACCAGATTCAAATTTGACAGTTCTGAGATGTCCCACTAGCAATGACAAAAATGAAAAGATACCACTTTTGAAGCAGGAGATTATAATGAATGTGGAAGAGTTCCCTAAAAGATGCGACCGGCGATATCTTACCAGGGGACTCTTGAGCTCTCGACCAGCTATTTTTATGGCTGTTTCAGTTGCTGTTTGCCTTGGTGTATGTGTATCCGTCCTTCATCATCATGGGAGGGTTAGTGAGTTGGCATTATCCATTAGAAGGTGCTTGTTTAACTACTAG 2397 0.4468 MEPQSQSQSQSQSQLQLQASLPLPPPPHMDPDDPSSSVWDLTYLLDFNLDDDAPVFPFDDNNLSETPLTDPQDQEEETHKVRKRDPMLTCPNFLAGRVPCACPEMDALLEEQGLPANKRPRTAPSAARCQVPGCEVDISELKGYHRRHRVCLRCANAPTVVFNGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKAPDSRAAADHEPQAVTQNEEFSGDLEAGKDCSNLSSEIVEKEASPPSRDHEEEPVAVWSSTLDTPNINGDSVVSFVASGTSAQVNGVNDVSNISNSPPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPLELEGYIRPGCTILTIFIAMPNIMWINLQKDPLYYVHDLVAPRKMLSGRGTTLVHLNDMMFRVMKDGTSVTKVEVNMQAPRLHYVHPTCFEAGRPMEFFACGSNLLQPKFRFLVSFSGKYLKYDYCVPSPHNWSEDNISCVNDNQLYKIYVPHTDECLFGPAFIEVDNESGLSNFIPVLIGDKEICTEMKTLQQKLDASLPSKQFQSASGDSICSSCEALAHRHTASSDLLVDIAWLLKDPTSESFDRVMTASQIQRYCYLLDFLICNDSTIILGRILPNLIILTESMKSNFVINRISDIDMTELLKCMHNARDAICQKHRKDGGVVAPSEMEDFEAAQSGSQNNMQSVVAVNYQGILPGPDSNLTVLRCPTSNDKNEKIPLLKQEIIMNVEEFPKRCDRRYLTRGLLSSRPAIFMAVSVAVCLGVCVSVLHHHGRVSELALSIRRCLFNY* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2798 798 Pfam SBP domain 129 203 IPR004333 GO:0003677
Lja6g2798 798 MobiDBLite consensus disorder prediction 1 19 - -
Lja6g2798 798 Gene3D - 125 190 IPR036893 GO:0003677|GO:0005634
Lja6g2798 798 MobiDBLite consensus disorder prediction 56 82 - -
Lja6g2798 798 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 32 796 - -
Lja6g2798 798 MobiDBLite consensus disorder prediction 1 37 - -
Lja6g2798 798 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 796 IPR044817 GO:0003677
Lja6g2798 798 SUPERFAMILY SBT domain 127 207 IPR036893 GO:0003677|GO:0005634
Lja6g2798 798 MobiDBLite consensus disorder prediction 193 265 - -
Lja6g2798 798 ProSiteProfiles Zinc finger SBP-type profile. 126 203 IPR004333 GO:0003677
Lja6g2798 798 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2798 Lja-Chr6 57060162 57066522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2798 26 792 SBP-box Gene Family AT5G18830 46.154 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja6g2798 SBP 5.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2798 - - lja:Lj6g3v1916050.1 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2798 6 57060162 57066522 Lja6g2798 6 57060162 57066522 ECH