LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g2793	ATGAACGATCAACGAGAACCACAACCTTCCTCCAGCAATGGCGTCCAGAAGTTAGATAGAAGACAATTGAAACTAAAAGAGGGTCCTTCTCTAAGAGGCAGAAGACCACGACCTGGCTTTTCTGATTCATTTTCAAACATTGACTTGGAAGCTTTAGAGATTGAAGAGGGAGGGTTACCCGAGTCCTCTCCAAGAAGTCAAGAATCCGAAACGAGTTCCAGGGCCAGCACTTCTGATTCTGAAAGCAATACTCACCAGTGGCGCGGTTTCTTTAAAATACTAAAGAAAGGATCCCAAATGCCTTTCCAAACCTTTCATCCTCTCAAAAATGTTCCGAAGCTGACTAGAAGAAAGAGCAAAAGAATCAGGGAGGACTTGATTCCATCTCTGAATTCACCAGCTCTTCAGTCATCTTTTGACTCTGATATGTACTGCTTCAAATCTTCCTGGAAAAATTTCACTCTCGCAGAGATCCAGGCTGCAACCAATGACTTTAGCCATGATAATTTAATTGGGGAGGGAGGCTATGCTGAGGTTTACTTAGGAAAATTGGAAGATGGAAACTTTGTTGCAATCAAACGGCTTACAAGAGGGTGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCATGTGGACCACCCCAACATTGCTAGATTGATTGGATATGGTGTTGAAGGGGGAATGTTTCTTGTTCTTCAGTTATCTCCACATGGAAGCCTTTCATCCATACTTTATGGACCAAGGGAGAAACTGAATTGGAACATCAGGTATAAGATTGCTTTGGGAACTGCTGAGGGCCTTCGCTATCTGCATGAGGAATGTCAAAGGAGGATTATTCACAAAGATATCAAGGCTTCTAATATACTGCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGCCTCGCAAAGTGGTTACCTGATCAATGGACTCACCACACTGTTTCCCAAGTGGAAGGGACATTTGGATATCTTCCTCCTGAATTCTTCATGCATGGCATAGTAGATGAAAAAACTGATGTCTATGCTTATGGGGTGCTATTGTTAGAGCTCATTACTGGAAGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTATCTTCTAATAACACCAAAGAGCTTGTAGATCCAGTTATGGTTGATGCTTATGATGAAGAGCAGATGAAACTAGTAATCTTAACAGCTTCTCTGTGCATAGACCAGTCTTCAATTCTGCGACCGCACATGAGCCAGGTGTTACAAATACTAAAAGGTGAAGAAGACGGCTTGAAATTGATAAAAGAGCGGCAGAAGTCAAAACTTCAGAGGACATACTCTGAAGAACTCTATGATGCAGAAGAGTACAACTCAACTAAGATATTGAGTGACAGGGATCGACACATGGAGACTATTTTAGGCTCGAGTAACTCTATCAAAGAAGAAGAAAGCAATAAAATAATCACTTTGAGTTTGAGTGAGAGGGAGAGACACATGGAGACTATTTTAGGCTCCAGTTCCATTAACTCTACCAATGAAGAAAGCAAGGAGAGCACTTTGAGTGAGAGGGAGAGGCACATGGAGACTATTTTAGGTTCCAGTTCCATTAACTCTACCAAAGAAGAAGAAAGCAATGAAAGCACTTTGAGTGAGAGGGAGAAACACATGGAGACTATTTTAGGCTCCAGTTCCAGTAACTCCATCAAAGAAGAAAGTAACTCCATCAAAGAAGATGAAATTGAAAAGTAG	1767	0.4165	MNDQREPQPSSSNGVQKLDRRQLKLKEGPSLRGRRPRPGFSDSFSNIDLEALEIEEGGLPESSPRSQESETSSRASTSDSESNTHQWRGFFKILKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDSDMYCFKSSWKNFTLAEIQAATNDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWNIRYKIALGTAEGLRYLHEECQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSQVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNTKELVDPVMVDAYDEEQMKLVILTASLCIDQSSILRPHMSQVLQILKGEEDGLKLIKERQKSKLQRTYSEELYDAEEYNSTKILSDRDRHMETILGSSNSIKEEESNKIITLSLSERERHMETILGSSSINSTNEESKESTLSERERHMETILGSSSINSTKEEESNESTLSEREKHMETILGSSSSNSIKEESNSIKEDEIEK*	589

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g2793	588	PANTHER	RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1	43	468	-	-
	Lja6g2793	588	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	284	296	IPR008271	GO:0004672\|GO:0006468
	Lja6g2793	588	MobiDBLite	consensus disorder prediction	508	588	-	-
	Lja6g2793	588	ProSitePatterns	Protein kinases ATP-binding region signature.	171	193	IPR017441	GO:0005524
	Lja6g2793	588	Gene3D	Transferase(Phosphotransferase) domain 1	242	457	-	-
	Lja6g2793	588	ProSiteProfiles	Protein kinase domain profile.	165	437	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja6g2793	588	SUPERFAMILY	Protein kinase-like (PK-like)	144	430	IPR011009	-
	Lja6g2793	588	Gene3D	Phosphorylase Kinase; domain 1	129	239	-	-
	Lja6g2793	588	MobiDBLite	consensus disorder prediction	62	84	-	-
	Lja6g2793	588	MobiDBLite	consensus disorder prediction	1	18	-	-
	Lja6g2793	588	MobiDBLite	consensus disorder prediction	550	564	-	-
	Lja6g2793	588	SMART	serkin_6	165	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja6g2793	588	MobiDBLite	consensus disorder prediction	1	84	-	-
	Lja6g2793	588	Pfam	Protein tyrosine and serine/threonine kinase	168	375	IPR001245	GO:0004672\|GO:0006468
	Lja6g2793	588	MobiDBLite	consensus disorder prediction	19	33	-	-
	Lja6g2793	588	PANTHER	OS08G0249100 PROTEIN	43	468	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g2793	Lja-Chr6	57017080	57020081	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g2793	136	434	Receptor kinase-like Gene Family	AT1G53420	40.065	4.34e-68	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Lja6g2793		PK_Tyr_Ser-Thr	1.9e-39	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja6g2793	6	57017080	57020081	Lja6g2793	6	57017080	57020081	ECH
	Lja6g2793	6	57017080	57020081	Lja1g0255	1	2182893	2186851	ECH
	Lja6g2793	6	57017080	57020081	Lja5g1504	5	15817684	15820816	ECH
	Lja6g2793	6	57017080	57020081	Lja1g1177	1	12065419	12071703	ECH
	Lja6g2793	6	57017080	57020081	Lja5g1102	5	11064267	11068326	ECH