Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2784 ATGGCTTCAGCAAGCAGAAGAGGAGGAGGAGGAGGAGGAAGTGGTTCTGGCTCAGTAGTAGAGCGAGGAAAGGAGGAGGAGAAGTTGAAGAGAGGCGGCGGCGGCGGAGGAGGAGAATCGGTTATGATGCGGAAAGCCATCGCACAGTACACCGAAGACGCGAGGCTTCACGCCGTGTACGAGCAGTCCGGCGAGTCTTTTGACTACTCCCACTCGCTTCGTGTCACGGTGGAGTCCGTCCCGGAGCAGCAGATAACCGCTTATCTTGCTAGAATTCAGCGCGGTGGTTACATCCAGCCGTTTGGTTGCATGATCGCCGTTGACGACCCGTCCTTCCGCCTCCTTGCTTACTCCGATAACGCCCGTGACATGCTCGGGATAACTCCGCAGTCGGTTCCTTCCATTGATGACGACTCGTCGTCTTCGTCGTTCGCGCTCGGCACCGATGTTCGTTCCTTGTTCTCTCCCTCCTCCGCGGTGCTTCTCGACAAGGCGTTCGCCGCCCGTGAGATCAGCCTCATGAACCCTCTCTGGATCCACTCTCGAACCTCCGGTAGGCCTTTCTACGGTATCCTCCACCGCGTTGATGTCGGTGTTGTTATCGATTTGGAGCCTGCTAGGTCAGACGACCCTGCGCTCTCCATCGCCGGTGCCGTACAGTCTCAGAAGCTCGCCGTTCGCGCGATCTCTCAGCTACAGTCGCTTCCCGGCGGTGATGTGAAGCTACTATGTGACGCGGTTGTGCAGAGTGTCCGGGAGCTTACTGGCTACGACAGGGTGATGGTTTACAAGTTCCATGAGGATGAGCACGGCGAGGTTGTGGCGGAGAGCAAGAGGGCAGATTTGGAGCCGTACATGGGTTTGCATTACCCTGCCACGGACATCCCTCAGGCTTCGAGGTTTTTGTTCAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTAGTCCTGTGGGTGTGGTTCAGGATGAGGCTCTGATGCAGCCTCTGTGTCTGGTGGGGTCCACGCTCCGTGCTCCTCACGGTTGCCATGCTCAGTACATGGCCAACATGGGTTCTATCGCGTCGTTGGTGATGGCGGTTATCATCAATGGGAATGATGATGACGCGGTTGGGGTTGGTGGCCGGAGCTCGATGAGGCTGTGGGGGCTTGTTGTTTGTCACCACACCTCTGCTAGGTGTATCCCTTTTCCGTTGAGGTATGCTTGTGAGTTCCTCATGCAGGCTTTTGGGCTGCAGCTGAACATGGAGCTTCAGATGGCGGCGCAGTCATTGGAGAAGCGAGTTTTGAGGACGCAGACCCTGTTGTGTGACATGCTTCTCAGGGACTCTCCTGCTGGGATTGTTACTCAGAGTCCTAGTATTATGGACCTGGTTAAGTGTGATGGCGCTGCGTTGTATTGCCAAGGGAGCTACTACCCTTTGGGTGTCACCCCGAGTGAGTCTCAGATAAGGGATATCATTGATTGGTTGTTGGCCTTTCATGGTGATTCCACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGGTACCCTGGGGCTTCTTCACTTGGGGATGCGGTTTGTGGCATGGCTGTTGCTTATATAACGGAGAAGGATTTTCTTTTCTGGTTCAGATCACACACGGCGAAGGAAATAAAATGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGATGATGGGCAGCGGATGCATCCCCGTTCTTCCTTCAAGGCATTTTTAGAAGTGGTGAAGAGCCGTAGTTCGCCGTGGGATAATGCGGAGATGGATGCAATTCACTCTTTGCAGCTTATCCTGCGGGACTCATTCAAGGAGGATGAACATAGCGATTCTAAGGCTGTTGTGAACACCCATCTGGCTGAGCTAGAGTTGCAAGGGGTGGATGAACTGAGTTCCGTGGCTAGAGAGATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCCGTTGATGTTGAGGGCCACATAAATGGGTGGAATGCAAAAGTTTCAGAATTGACAGGTCTCCCAGTTGAAGAGGCTATGGGGAAGTCCTTGGTTCGTGATCTTGTGTATAAGGAGTCTGAAGAAACTGTGGACAGGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAATTGAGGACATTTGGCCCAGAACATCAAGATAAGGCAGTTTATGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGGGTGTGCTTTGTTGGTCAGGATGTCACTGGTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTATAAAGCTATTGTACACAGCCCAAATCCACTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCCATGGAAAAGCTCACTGGTTGGGGTCGTGCAGATGTCATTGGAAAATTGTTAGTAGGAGAGGTTTTTGGCAGCTGCTGTCAGTTAAAGGGTTCAGATGCTATAACAAAGTTTATGATTGTCTTGCACAATGCGCTTGGTGGACAAGATACAGATAAATTCCCTTTTTCATTTCTCGACCGGCATGGAAAATATGTGCAAACTTTCTTGACTGCAAATAAGAGGGTTAGCATAGATGGTCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCTCTGAAGGTCCAGAAACAACAAGAGAAGAATTGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAAAATCCCTTGAGCGGGATACGCTTTACAAACTCTCTTTTGGAGGCTACAGGCTTGACGGATGAGCAAAAACAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACGGGACGTTGATCTGGAAAGCATCGAGGATGGGTCCCTGGAGCTTGAAAGGGGAGAATTCTTGCTTGGGAATGTCATAAATGCAGTAGTTAGTCAAGTAATGGTCTTGCTAAGAGAAAGAAATCTACAGTTGATTCGTGATATTCCTGAAGAAATCAAAACATTGGCTGTTTATGGTGATCAGTTGAGGATTCAACAAGTATTGGCTGATTTCTTATCAAATGTTGTGCGGTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTATACCCAAAAATAAAGCAAATTTCAGACGGGCTCACCCTTCTCCATGCTGAATTTCGGTTGGTATGCCCTGGTGAAGGTCTTCCTTCTGAATTGGTTCAAGACATGTTTCATAACAGTCGGTGGGTGACTCAAGAAGGCCTAGGGCTATGCATGAGCAGGAAGATTCTGAAGTTAATGAACGGCGAAGTCCAATACATCAGGGAGGCAGAACGGTGCTACTTCTTTGTTCTACTTGAACTACCGGTGACACGCAGAAGCTCTAAAGGTGTTAACTAG 3432 0.4892 MASASRRGGGGGGSGSGSVVERGKEEEKLKRGGGGGGGESVMMRKAIAQYTEDARLHAVYEQSGESFDYSHSLRVTVESVPEQQITAYLARIQRGGYIQPFGCMIAVDDPSFRLLAYSDNARDMLGITPQSVPSIDDDSSSSSFALGTDVRSLFSPSSAVLLDKAFAAREISLMNPLWIHSRTSGRPFYGILHRVDVGVVIDLEPARSDDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDAVVQSVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYMGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVGVVQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDDAVGVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQMAAQSLEKRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYCQGSYYPLGVTPSESQIRDIIDWLLAFHGDSTGLSTDSLADAGYPGASSLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSSPWDNAEMDAIHSLQLILRDSFKEDEHSDSKAVVNTHLAELELQGVDELSSVAREMVRLIETATAPIFAVDVEGHINGWNAKVSELTGLPVEEAMGKSLVRDLVYKESEETVDRLLSRALKGEEDKNVEIKLRTFGPEHQDKAVYVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNNAMEKLTGWGRADVIGKLLVGEVFGSCCQLKGSDAITKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVSIDGQIIGAFCFLQIVSPELQQALKVQKQQEKNCFARMKELAYICQEVKNPLSGIRFTNSLLEATGLTDEQKQFLETSAACEKQMLKIIRDVDLESIEDGSLELERGEFLLGNVINAVVSQVMVLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLSNVVRYAPSPDGWVEIHVYPKIKQISDGLTLLHAEFRLVCPGEGLPSELVQDMFHNSRWVTQEGLGLCMSRKILKLMNGEVQYIREAERCYFFVLLELPVTRRSSKGVN* 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2784 1143 SMART HisKA_10 909 973 IPR003661 GO:0000155|GO:0007165
Lja6g2784 1143 ProSitePatterns Phytochrome chromophore attachment site signature. 339 348 IPR013516 -
Lja6g2784 1143 Gene3D - 220 580 IPR029016 -
Lja6g2784 1143 SUPERFAMILY GAF domain-like 427 604 - -
Lja6g2784 1143 Pfam His Kinase A (phospho-acceptor) domain 913 973 IPR003661 GO:0000155|GO:0007165
Lja6g2784 1143 Gene3D PAS domain 781 890 - -
Lja6g2784 1143 ProSiteProfiles Histidine kinase domain profile. 916 1136 IPR005467 -
Lja6g2784 1143 SMART gaf_1 239 429 IPR003018 GO:0005515
Lja6g2784 1143 CDD PAS 779 887 IPR000014 -
Lja6g2784 1143 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 984 1132 IPR036890 -
Lja6g2784 1143 Pfam Phytochrome region 432 607 IPR013515 GO:0006355|GO:0009584
Lja6g2784 1143 SUPERFAMILY PYP-like sensor domain (PAS domain) 639 748 IPR035965 -
Lja6g2784 1143 SUPERFAMILY GAF domain-like 219 416 - -
Lja6g2784 1143 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 239 409 IPR016132 -
Lja6g2784 1143 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 901 965 IPR036097 GO:0000155|GO:0007165
Lja6g2784 1143 MobiDBLite consensus disorder prediction 1 40 - -
Lja6g2784 1143 CDD HATPase_Phy-like 1020 1132 IPR044767 -
Lja6g2784 1143 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1021 1128 IPR003594 -
Lja6g2784 1143 ProSiteProfiles PAS repeat profile. 634 705 IPR000014 -
Lja6g2784 1143 PIRSF Phytochrome_conventional 34 1141 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lja6g2784 1143 PRINTS Phytochrome signature 154 176 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PRINTS Phytochrome signature 254 273 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PRINTS Phytochrome signature 339 360 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PRINTS Phytochrome signature 449 469 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PRINTS Phytochrome signature 534 553 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PRINTS Phytochrome signature 567 585 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PRINTS Phytochrome signature 637 653 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PRINTS Phytochrome signature 656 671 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PRINTS Phytochrome signature 730 747 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PRINTS Phytochrome signature 750 770 IPR001294 GO:0006355|GO:0009584
Lja6g2784 1143 PANTHER PHYTOCHROME 41 1137 - -
Lja6g2784 1143 CDD HisKA 909 965 IPR003661 GO:0000155|GO:0007165
Lja6g2784 1143 Gene3D - 891 972 - -
Lja6g2784 1143 PANTHER TWO-COMPONENT HISTIDINE KINASE 41 1137 - -
Lja6g2784 1143 Gene3D - 973 1139 IPR036890 -
Lja6g2784 1143 ProSiteProfiles PAS repeat profile. 768 820 IPR000014 -
Lja6g2784 1143 SMART pas_2 767 837 IPR000014 -
Lja6g2784 1143 SMART pas_2 636 703 IPR000014 -
Lja6g2784 1143 SMART HKATPase_4 1021 1136 IPR003594 -
Lja6g2784 1143 SUPERFAMILY PYP-like sensor domain (PAS domain) 782 886 IPR035965 -
Lja6g2784 1143 Gene3D - 424 597 IPR043150 -
Lja6g2784 1143 Pfam PAS fold 637 752 IPR013767 GO:0006355
Lja6g2784 1143 Pfam PAS fold 768 887 IPR013767 GO:0006355
Lja6g2784 1143 Gene3D PAS domain 632 756 - -
Lja6g2784 1143 Gene3D PAS domain 91 342 - -
Lja6g2784 1143 CDD PAS 645 752 IPR000014 -
Lja6g2784 1143 SUPERFAMILY PYP-like sensor domain (PAS domain) 92 210 IPR035965 -
Lja6g2784 1143 Pfam GAF domain 240 419 IPR003018 GO:0005515
Lja6g2784 1143 Pfam PAS fold 87 206 IPR013654 GO:0006355
Lja6g2784 1143 TIGRFAM sensory_box: PAS domain S-box protein 641 756 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2784 Lja-Chr6 56928704 56935560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2784 35 1134 Histidine Kinase Gene Family AT4G16250 74.887 0.0 1741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2784 K12121 - gmx:100799831 1983.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2784 6 56928704 56935560 Lja6g2784 6 56928704 56935560 ECH