Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2783 ATGGGTACCCCAGAAGCAGAGGAAGAGCTTGTCAAGAAGATAGAACGTTTAGAAGCTGGTCACGTTCACCTCAAGCAAGAAATGTCCAAGCTCAAGCTCTCTCAACGCCGCAGGTCTCACTCCGTCTCACCGCAGCGTTCACGCCTCGCTGGTGGTGGCGGTGCTGCTAACAAAGCTCCTTCTTCTCCTCTGCAGAGAGAGAGTCGCGGTGGTGGTGGTGGTGGTCAAAATGGTGGCAAGTATCTCAATATCTTGCAGTCAATGGGTCACTCTGTTCATATACTTGATCTTCAATGTCGTATCGTGTACTGGAACCCTAGTGCTGAGAATCTGTATGGTTATGCAGCAGCTGAAGTTCTTGGCCATGATGGGATTGAGGTGGTGGTAGACCCTAGAGAAATTGCATTAGCTAATGATATATTCAACCGTGTGAAAATGGGAGAGAGTTGGACTGGTAAATTCCCTGTGAAGAATAAGATGGGGGAGAGTTTCATTGCTGTGGCAACTAATACACCTTTCTATGATGATCATGGAAGCTTGGTTGGTGTTATTTGTGTCTCAAGTGATTCAAGACCCTTTCTTGAAACAAGAGTTCCCTTGTCAGGAGGGAAGAATGCAGCACCAGATTTAGGTTCCAACTTTCCTAGAAGTGGGAGTACAAGTAAACTAGTCCTTGACTCTCAGCAGCCACTTCAAGTTTCTCTAGCATCAAAAATTTCAAATTTGGCATCGAAGGTGAGTAACAAAGTTAAGTCTAGGATGCGGACTCGAGATAATAATGTTGATGGAGGAGAAGGTGGGAGTGGAGAAAGTCAATATTCTGAGCATAATGTTCCTTCTGACCAGAGAGAGGATGTGAATTCCAGTGGAGCTAGCACACCCAGAGAAGGGGTGCCACAGTCTCCTTTTGGTGTATTTTCTCAAGTTGAGGAGAAATCCCAAGGAAAAAACTTGAGGGACTCTGTTGATGAGAATGAAGGAAAACCTATTCGCAAGATCATAACTTCTAAGGCTGAAGCATGGATTCAAAAGAGAACAATGTCATGGCCATGGAGAGGAGATGATCGGGAAGAATCCGAGGGAAAGAATGTCGGCGTTGCTTGGCCTGGGTCACAGGGTGATCAAGAAAAAGAGACAGTTAACCAGAGAAACTTATCTGTCAGGTTGAAGCCAGAAAGCCAGGCAGTTGAAAGTAATCAACCTGTTAATAATGAGGCTTCAGGATCCTGGTCCTCCTTCAATGTTAATAGCACAAGCAGTACCAGCAGCTGTGGGAGTTGCAGCAGTTCTGCTGCCAATAATAAGGTGGACATTGACACTGATAGTTTGGATTATGAAATTTTGTGGGATGACTTGACAGTGGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTGTATCATGCTCTGTGGTATGGATCAGATGTTGCCGTCAAGGTTTTCTCAAAGCAAGAGTACACAGATGATGTGATACTGTCCTTCAGACAAGAGGTATCTGTCATGAAAAAACTTCGCCATCCAAATATCCTTCTCTTTATGGGGGCAGTGACTTCACCTCAACGTCTATGCATTGTAACAGAGTTTCTCCCACGTGGAAGCTTGTTCCGTTTGCTCCAGAGGAATACTTCTAAATTTGACTGGAGACGGCGAGTTCTTATGGCCTTAGATATTGCTCGAGGTGTAAATTATCTTCATCATTGTCACCCCCCTATTGTCCATCGAGACTTGAAGTCTTCAAATCTTCTAGTTGATAAGAACTGGACTGTCAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAGACGTATCTCACAACTCGGACAGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGTAACGAACCCTCTGATGAGAAGTCTGACGTTTACAGCTTTGGGGTGATATTGTGGGAACTTGCGACTGAAAAGATCCCTTGGGATACTCTCAATACAATGCAGGTTATTGGAGCTGTTGGTTTTATGAACAATCGGCTAGAAATTCCAGAAGATGTTGATCCACAGTGGGCTTCTATAATAGAGGGTTGCTGGCAAAGCGATCCAGCTTGCCGACCAAGTTTCCGGGAACTGTTAGATAGGCTTAGAGAACTGCAGAGACGGTACGCCATTCAGTTCCAGGCAGCCAGATCTAATGGTGGGGAAGGCGCCCAAAAGGATTCATAG 2193 0.4537 MGTPEAEEELVKKIERLEAGHVHLKQEMSKLKLSQRRRSHSVSPQRSRLAGGGGAANKAPSSPLQRESRGGGGGGQNGGKYLNILQSMGHSVHILDLQCRIVYWNPSAENLYGYAAAEVLGHDGIEVVVDPREIALANDIFNRVKMGESWTGKFPVKNKMGESFIAVATNTPFYDDHGSLVGVICVSSDSRPFLETRVPLSGGKNAAPDLGSNFPRSGSTSKLVLDSQQPLQVSLASKISNLASKVSNKVKSRMRTRDNNVDGGEGGSGESQYSEHNVPSDQREDVNSSGASTPREGVPQSPFGVFSQVEEKSQGKNLRDSVDENEGKPIRKIITSKAEAWIQKRTMSWPWRGDDREESEGKNVGVAWPGSQGDQEKETVNQRNLSVRLKPESQAVESNQPVNNEASGSWSSFNVNSTSSTSSCGSCSSSAANNKVDIDTDSLDYEILWDDLTVGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYTDDVILSFRQEVSVMKKLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSKFDWRRRVLMALDIARGVNYLHHCHPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTRTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDTLNTMQVIGAVGFMNNRLEIPEDVDPQWASIIEGCWQSDPACRPSFRELLDRLRELQRRYAIQFQAARSNGGEGAQKDS* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2783 730 SMART pas_2 79 145 IPR000014 -
Lja6g2783 730 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 27 728 - -
Lja6g2783 730 MobiDBLite consensus disorder prediction 26 75 - -
Lja6g2783 730 SUPERFAMILY PYP-like sensor domain (PAS domain) 83 186 IPR035965 -
Lja6g2783 730 MobiDBLite consensus disorder prediction 199 225 - -
Lja6g2783 730 ProSiteProfiles Protein kinase domain profile. 452 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2783 730 MobiDBLite consensus disorder prediction 247 331 - -
Lja6g2783 730 Gene3D Transferase(Phosphotransferase) domain 1 530 728 - -
Lja6g2783 730 MobiDBLite consensus disorder prediction 313 331 - -
Lja6g2783 730 Gene3D PAS domain 90 192 - -
Lja6g2783 730 CDD STKc_MAP3K-like 458 704 - -
Lja6g2783 730 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 728 - -
Lja6g2783 730 MobiDBLite consensus disorder prediction 351 409 - -
Lja6g2783 730 CDD PAS 92 189 IPR000014 -
Lja6g2783 730 MobiDBLite consensus disorder prediction 374 409 - -
Lja6g2783 730 PRINTS Tyrosine kinase catalytic domain signature 565 583 IPR001245 GO:0004672|GO:0006468
Lja6g2783 730 PRINTS Tyrosine kinase catalytic domain signature 631 653 IPR001245 GO:0004672|GO:0006468
Lja6g2783 730 PRINTS Tyrosine kinase catalytic domain signature 675 697 IPR001245 GO:0004672|GO:0006468
Lja6g2783 730 PRINTS Tyrosine kinase catalytic domain signature 526 539 IPR001245 GO:0004672|GO:0006468
Lja6g2783 730 PRINTS Tyrosine kinase catalytic domain signature 612 622 IPR001245 GO:0004672|GO:0006468
Lja6g2783 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Lja6g2783 730 Pfam Protein tyrosine and serine/threonine kinase 452 704 IPR001245 GO:0004672|GO:0006468
Lja6g2783 730 ProSiteProfiles PAS repeat profile. 77 148 IPR000014 -
Lja6g2783 730 Coils Coil 7 34 - -
Lja6g2783 730 TIGRFAM sensory_box: PAS domain S-box protein 81 189 IPR000014 -
Lja6g2783 730 Pfam PAS fold 81 187 IPR013767 GO:0006355
Lja6g2783 730 Gene3D Phosphorylase Kinase; domain 1 445 529 - -
Lja6g2783 730 SMART serkin_6 452 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2783 730 SUPERFAMILY Protein kinase-like (PK-like) 440 704 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2783 Lja-Chr6 56918111 56925344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2783 1 720 MAP Kinase Kinase Kinase AT3G06620 59.633 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lja6g2783 PK_Tyr_Ser-Thr 7.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2783 - - gmx:100815858 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2783 6 56918111 56925344 Lja6g2783 6 56918111 56925344 ECH
Lja4g1364 4 12215122 12228074 Lja6g2783 6 56918111 56925344 PCT