Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2780 ATGGCTTGTTCTTCTTCATCGTGGTTTCATGCTTCAACATTCACACCGCAAATTATCATATTCGTCTTCTTCTGCATTTCATGTTGCGCTCTTGGCTTCGACGCACAAAATGTCATAGACTCCCCTTTGTTAACACAAAAGTTAGGAATTAATCGCACCATCAAAGTAGATATCAATGGAAATGGTGACTTCAAATCTGTCCAAGCTGCTATTGATTCCATTCCTGATGGAAATCCCGGTTGGGTCATCGTCCATGTTAGGAAAGGAGTGTATAGAGAAAAGGTGCATATACCAGAGACTAAGCCTCATATATTCATGAGAGGGAATGGCAAAGGAAAAACTGCCATAGTTTGGTCCGAGAGCTCTTCTGACAACAATGCTTCTGCTACCTTCAAAGTAGAAGCTCCTGATTTCATTGCTTTTGGAATAAGCTTCAAGAATGATGCACCAACAGGGGTTGCCTATACCTCTCAGAATCAATCAGTGGCAGCATTTGTGGCAGCAGACAAAGCGGCATTTTACCATTGTGCATTTTACAGCACTCATAACACTCTCTTTGATTACAAAGGCAGACATTATTATGAGTCATGTTACATTCAAGGTTCCATCGATTTCATATTTGGCCGTGGCAGATCCATCTTCCAGGGTTGTGAAATATTTGTGGTTGATGACAAAAGGACGCCAATCAAGGGGTCAGTCACAGCTCAAAACAGGGAAAGTGAAACTGAGATTAGTGGGTTTATCTTCAACAAATGCAAGGTTTATGGCATTGGAGGGGTGTACCTGGGAAGAGCCAAGGGTCCTTATTCTAGGGTAATTTTTGCCAAGTCATATCTCTCCATGACCATTGTCCCAGAAGGGTGGACCAATTGGAGCTATCCTGGGAGCACAAAAAATTTATACCTTGCGGAGTACAAGTGCCATGGTCCCGGAGCCACGACGGAGAAACGCGCTTCTTGGTCAAGACAGCTTAGTGATGAAGAAGCTGCTCAATTTTTATCTGTTGATTACATTGATGGCAAGAATTGGTTGCCAGTTTGGTTATAA 1047 0.4269 MACSSSSWFHASTFTPQIIIFVFFCISCCALGFDAQNVIDSPLLTQKLGINRTIKVDINGNGDFKSVQAAIDSIPDGNPGWVIVHVRKGVYREKVHIPETKPHIFMRGNGKGKTAIVWSESSSDNNASATFKVEAPDFIAFGISFKNDAPTGVAYTSQNQSVAAFVAADKAAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSIFQGCEIFVVDDKRTPIKGSVTAQNRESETEISGFIFNKCKVYGIGGVYLGRAKGPYSRVIFAKSYLSMTIVPEGWTNWSYPGSTKNLYLAEYKCHGPGATTEKRASWSRQLSDEEAAQFLSVDYIDGKNWLPVWL* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2780 348 Gene3D - 48 347 IPR012334 -
Lja6g2780 348 Pfam Pectinesterase 55 340 IPR000070 GO:0030599|GO:0042545
Lja6g2780 348 ProSitePatterns Pectinesterase signature 2. 199 208 IPR033131 -
Lja6g2780 348 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 17 347 - -
Lja6g2780 348 PANTHER PECTINESTERASE 67-RELATED 17 347 - -
Lja6g2780 348 SUPERFAMILY Pectin lyase-like 50 346 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2780 Lja-Chr6 56904474 56906363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2780 56 344 Carbohydrate Esterase AT1G05310 40.541 7.20e-76 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2780 - - mtr:MTR_2g033970 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2780 6 56904474 56906363 Lja6g2780 6 56904474 56906363 ECH