Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2777 ATGCTTCAGGCGTTGATGAATCTCTTCTCTCCGTGTTGGAAGCCGTTCAAGAACGGTGATGACTCTTCTGCCGGAGCCGGAGGAGGAGGAGGCATTGTCGGAGGAGGAGGAGGAAAAGGTGAAGGCAAGGACGGCTTGCTCTGGTTCCGTGACATCGGAAAGTACGGCTCCGGTGAATTCTCCATGGCCGTTGTTCAGGCCAACCAGGTTCTTGAAGACCAGAGCCAGATCGAGTCTGGTCCCCTCGGCACCTTCGTCGGGGTTTACGACGGCCACGGCGGCCCCCTCGCCGCCCGATTCGTCTGCGATCACTTGTTCCGCAATTTCCAAGCAATATCGGGTGAGTCACAGGGTGTTGTGACGGCTGAGACCATTCGAGCAGCGTTCCTTCGAACAGAAGAGGGGTTCACGGCACATGTAACGGAATTATGGAATACTCAACCTCAAATTGCGACTAATGGGACGTGTTGTCTGGTTGGAGTGATTTTTCAGCAGACCCTCTTCGTGGCAAATCTTGGAGATTCTCGTTGTGTGCTGGGAAAGAAAGTTGGTAACACTGGTGGGGTTGCTGCAATTCAGCTGTCTACGGAGCACAACGCGAATCTTGAGGATATTAGACAGGAGCTTAAAGAATTGCACCCTGACGATCCCCAAATTGTCGTCCTCAAACATGGAGTGTGGAGAGTGAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACTCGTATATGAAACATGCGCAGTTTAATCGGGAACCTATTAATCCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCATGTCTGCTAATCCAACTATTCTTTCTCATCCTCTCCAACCAAGTGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAATGAGCAAGCAGTTGATATTGTTCACAGCAATCCACGTGCGGGTAGTGCAAAGAGACTTGTGAAGGCTGCGCTGCAGGAAGCAGCAAGGAAACGTGAAATGAGATATTCGGACCTTCGAAAGATAGACAAGAAGGTCCGGCGGCATTTTCATGACGATATAACTGTTATTGTTTTATTCTTAAATCACGACCTTATATCTAGAGGTTCAGTTCTAAACCCGCCACTCTCACTTCGAAGTGCTCTTGATCACTGA 1152 0.4861 MLQALMNLFSPCWKPFKNGDDSSAGAGGGGGIVGGGGGKGEGKDGLLWFRDIGKYGSGEFSMAVVQANQVLEDQSQIESGPLGTFVGVYDGHGGPLAARFVCDHLFRNFQAISGESQGVVTAETIRAAFLRTEEGFTAHVTELWNTQPQIATNGTCCLVGVIFQQTLFVANLGDSRCVLGKKVGNTGGVAAIQLSTEHNANLEDIRQELKELHPDDPQIVVLKHGVWRVKGIIQVSRSIGDSYMKHAQFNREPINPKFRLPEPMNMPIMSANPTILSHPLQPSDSFLIFASDGLWEHLSNEQAVDIVHSNPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDITVIVLFLNHDLISRGSVLNPPLSLRSALDH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2777 383 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 383 - -
Lja6g2777 383 PANTHER ALPHABET, ISOFORM E-RELATED 3 383 - -
Lja6g2777 383 SUPERFAMILY PP2C-like 68 361 IPR036457 -
Lja6g2777 383 ProSiteProfiles PPM-type phosphatase domain profile. 56 360 IPR001932 -
Lja6g2777 383 ProSitePatterns PPM-type phosphatase domain signature. 85 93 IPR000222 GO:0043169
Lja6g2777 383 Pfam Protein phosphatase 2C 83 330 IPR001932 -
Lja6g2777 383 Gene3D - 51 368 IPR036457 -
Lja6g2777 383 CDD PP2Cc 60 360 IPR001932 -
Lja6g2777 383 SMART PP2C_4 46 358 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2777 Lja-Chr6 56879270 56884140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2777 1 380 PP2C-type Phosphatase Gene Family AT4G38520 57.584 1.35e-156 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2777 K01102 - gmx:100811922 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2777 6 56879270 56884140 Lja6g2777 6 56879270 56884140 ECH
Lja4g1371 4 12272309 12276460 Lja6g2777 6 56879270 56884140 PCT