Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2775 ATGGCTTCTTCTCTGATCTCAAACTCACCCTCCACCGGCGGCGACCGGTCACGTGATCCACACAGAACAACGATGAAGAGGAAGAAGAAATCAAGGCTGAATCACCAGAATCAGCAAGATCAATCATCTCAGCCCGCGAAATGGAGATCGCAGGCGCAGCAACAGCTTTACTCCTCCAAGCTCCGGCAGGCTTTGGTTAGAGTCAACGGCGGCGGTGGTTCCGGGAAGGGGAAGGCGGTACGGGATGCTGCTGATAGAGCTCTTGCAGTGGCGGCGAGGGGGAGGACGCGGTGGAGCAGGGCGATTCTCACCAACCGGATTAAGATCAAATTCAGGAAGCAGCAGCAGCAGCAGCGGAAGAGGCTCCTGCAGCAGAAGCCAGCTGGACCGGGCCGGTCGAAGAAGGCCCGGTTCAGCGTGCTCCGCCTCAAAGGGAAGACGCTCCCGGCGGTTCAGAGGAAGGTCAGGTTTCTGGGCCGGTTGGTCCCTGGTTGCCGGAAAGAACCTCTGCCGGTTATTCTGGAAGAAGCCATTGATTACATCCCGGCGCTTGAGATGCAAGTTCGAGCCATGGCAGCCCTCGCTGACTTACTCTTAGGCTCCTCCTCCTCCGGCGGCGGCAGCTCCAGCTTCCCGCCGCCGAGCTGA 648 0.5941 MASSLISNSPSTGGDRSRDPHRTTMKRKKKSRLNHQNQQDQSSQPAKWRSQAQQQLYSSKLRQALVRVNGGGGSGKGKAVRDAADRALAVAARGRTRWSRAILTNRIKIKFRKQQQQQRKRLLQQKPAGPGRSKKARFSVLRLKGKTLPAVQRKVRFLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRAMAALADLLLGSSSSGGGSSSFPPPS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2775 215 CDD bHLH_AtIBH1_like 140 189 IPR044549 GO:0006355
Lja6g2775 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 199 IPR036638 GO:0046983
Lja6g2775 215 MobiDBLite consensus disorder prediction 1 53 - -
Lja6g2775 215 MobiDBLite consensus disorder prediction 36 53 - -
Lja6g2775 215 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 20 210 IPR044660 GO:0006355
Lja6g2775 215 MobiDBLite consensus disorder prediction 113 135 - -
Lja6g2775 215 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 20 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2775 Lja-Chr6 56862348 56863747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2775 46 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 55.135 3.62e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2775 - - lja:Lj4g3v2265240.1 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2775 6 56862348 56863747 Lja6g2775 6 56862348 56863747 ECH