Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2773 ATGGAGGAGACCAAAAGAAGAGACCAACTGACACACCCCACCACCAACTCATCTTCCACCACCACAGCCACCATGGCATTCTCCGACGAGATTCCGATTCCGAGCATGAGCACAACCACCACCTCTAGCTTCCTCTTCCAACCTTCCCCTGTCTCCACCATATTTGACCACCCGATGCCATCGTCCTGTCACCAAAAGGACTCATCATCCTTCATGGATTTGCTGGCTTTCAACGACGATTACAACAACTCCGTTTTAGATTGGCTTCCGATCACCGGCGACCCGGTCAACCTCAACCACCCTCTTCCATCGCCGTCATCGGAGGTGCTGAACACTCCGGCGTCACCCAATAATTCGTGTTCGATCTCTTCATCGTCGAATGAAGGCAGCGCGAAGGTGCAGCAGAGTACTGAACCAAAAACAGAGCTGGAAGAAGAAGATAACAATGGAAATGGAGATGGAGGCAGAGGAGATGACCCTGCAGAACAAGACAAAACTAAGAAACAGCTGAAAACAAAGAAGAAGAAGAATGTGAAGAAGGAAAGAGAAGCACGATTTGCTTTCATGACAAAGAGCGAGGTGGATCAGCTGGATGATGGATACAGGTGGCGCAAGTACGGCCAAAAAGCTGTCAAAAACAGCCCTTATCCCAGGAGCTACTACCGCTGCACGGCGGCTAGTTGCGGCGTGAAGAAGCGTGTGGAACGTTCCTCCCATGACCCTTCAGTGGTTGTGACCACCTACGAGGGACAACACATCCACCCGTGCCCCACCACGACACGCTCCACCCTAGCCTCCTTCATGCATAATAATGAACCTTCTTTTGGCTTCGCCAATGTCAGTGCTTCACAGTATTCATCACAACACTCCTTTGCGCTCCCTCATGCATCATCAACATCTGCAACCATGTTATATAACTCATCCACAACTCCTTTGAGCACGACCTCGTCGTTTGGTGGGTTTGTTCATCAAGACCATGCTGGGAATCATTATCATCAGCAGGAGGCTATGTTAAGGGACAATGGGCTGCTTCAGGACATTATTTTGCCATCAAATATTATGAGCAATATTCAGGACAACAAGGATTCTTTCATTTAG 1098 0.4918 MEETKRRDQLTHPTTNSSSTTTATMAFSDEIPIPSMSTTTTSSFLFQPSPVSTIFDHPMPSSCHQKDSSSFMDLLAFNDDYNNSVLDWLPITGDPVNLNHPLPSPSSEVLNTPASPNNSCSISSSSNEGSAKVQQSTEPKTELEEEDNNGNGDGGRGDDPAEQDKTKKQLKTKKKKNVKKEREARFAFMTKSEVDQLDDGYRWRKYGQKAVKNSPYPRSYYRCTAASCGVKKRVERSSHDPSVVVTTYEGQHIHPCPTTTRSTLASFMHNNEPSFGFANVSASQYSSQHSFALPHASSTSATMLYNSSTTPLSTTSSFGGFVHQDHAGNHYHQQEAMLRDNGLLQDIILPSNIMSNIQDNKDSFI* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2773 365 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 45 350 - -
Lja6g2773 365 MobiDBLite consensus disorder prediction 1 25 - -
Lja6g2773 365 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 45 350 IPR044810 GO:0003700
Lja6g2773 365 Gene3D WRKY domain 181 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g2773 365 MobiDBLite consensus disorder prediction 138 168 - -
Lja6g2773 365 Coils Coil 163 183 - -
Lja6g2773 365 ProSiteProfiles WRKY domain profile. 192 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2773 365 Pfam WRKY DNA -binding domain 198 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2773 365 SUPERFAMILY WRKY DNA-binding domain 189 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g2773 365 SMART WRKY_cls 197 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2773 365 MobiDBLite consensus disorder prediction 100 179 - -
Lja6g2773 365 MobiDBLite consensus disorder prediction 11 25 - -
Lja6g2773 365 MobiDBLite consensus disorder prediction 100 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2773 Lja-Chr6 56818822 56822263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2773 166 354 WRKY Transcription Factor Family AT2G47260 49.515 6.34e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja6g2773 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2773 - - gmx:100127422 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2773 6 56818822 56822263 Lja6g2773 6 56818822 56822263 ECH
Lja6g2773 6 56818822 56822263 Lja4g4137 4 74780227 74782375 ECH
Lja6g2773 6 56818822 56822263 Lja4g1374 4 12310517 12312763 PCT