Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2754 ATGGAAGTGAAAGGAAGGGTAAGCAACTCCAGCTTCAACAACAACAACACACTCATCCAAAGTGAAGATGAGATGGATCTTCGAAGAGGTCCTTGGACCGTTGATGAAGACCTTGCTCTCATCAATTACATTGCCAATAACGGTGAAGGTCGCTGGAACTCCCTTGCTCGTTCTGCTGGACTCAAACGAACCGGCAAAAGTTGTAGGTTGAGGTGGTTGAATTATCTCCGCCCTGATGTTCGACGAGGTAACATCACACTCGAGGAGCAACTTCTTATTCTCGAGCTCCATAGTCGCTGGGGAAACCGATGGTCTAAAATTGCACAATATCTACCCGGAAGAACCGACAATGAAATTAAGAACTATTGGAGAACTCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAACAGCAAGCAATTCAAGGATGCCATGCGCTACCTATGGATGCCAAGGCTGGTGGAGCGCATTCAAGCTGCTGCCGCCTCCACTGCAACGGCCACAACCGCTTCTCCAGCCTTTTCTGCCGGTGCCAACACAACGGTCACAGCCAACAACAACACCACATACAACAATTTTGAGGTTCATAGTGGGAACATGATGTTAGCTCCCACAATTATGAGCAACAACAACAACTTTGGTGGCTCACACGTGACACAAAGTTACACTACTCCAGAGAATAGCAGCAATGGAACGGCATCATCAGACTCGTTTGGGACACAAGTTTCACCTGTCTCGGACTTGACTCATCAGGATTATTACAATAATGTCCCTGTTGGTAGTAATAATAATGTCCCTAACCCTGATTATTACTACCAACAAGCTCATCAACTGGGGTTTTCAGACTGCATCACTAGCCCCTCCGGGATGTTCCCTACTCAGGAGATGGAGATGGATTACTTCAATTCCATGGATCCAAACACGCCGTGGATTCAAAGCGGGGACACAACCGACAATTTCTGGAATGTTGATAACATGTTGCTCTTTCAACAGCTTAACATGTGA 1011 0.4649 MEVKGRVSNSSFNNNNTLIQSEDEMDLRRGPWTVDEDLALINYIANNGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAASTATATTASPAFSAGANTTVTANNNTTYNNFEVHSGNMMLAPTIMSNNNNFGGSHVTQSYTTPENSSNGTASSDSFGTQVSPVSDLTHQDYYNNVPVGSNNNVPNPDYYYQQAHQLGFSDCITSPSGMFPTQEMEMDYFNSMDPNTPWIQSGDTTDNFWNVDNMLLFQQLNM* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2754 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Lja6g2754 336 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Lja6g2754 336 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Lja6g2754 336 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Lja6g2754 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 131 IPR017930 -
Lja6g2754 336 CDD SANT 31 76 IPR001005 -
Lja6g2754 336 Gene3D - 86 149 - -
Lja6g2754 336 SMART sant 81 129 IPR001005 -
Lja6g2754 336 SMART sant 28 78 IPR001005 -
Lja6g2754 336 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 334 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja6g2754 336 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
Lja6g2754 336 CDD SANT 102 125 IPR001005 -
Lja6g2754 336 Gene3D - 26 82 - -
Lja6g2754 336 PANTHER MYB TRANSCRIPTION FACTOR 14 334 - -
Lja6g2754 336 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Lja6g2754 336 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2754 Lja-Chr6 56631499 56633744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2754 1 325 MYB Transcription Factor Family AT3G06490 52.339 4.29e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g2754 Myb_DNA-binding 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2754 K09422 - gmx:100805341 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2754 6 56631499 56633744 Lja6g2754 6 56631499 56633744 ECH