Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2749 ATGGTGGTGGAAACGGAACTCATCTGTCAACAACAGACCATTCCCGTTTTGGATGTTAAGTATCACCTTCACGTCGCGCAAGAACACGCTCTCAAGGTTGAGGTTTCACCTTCCTCCAATGCCGGTATTCCAGTCTTTAGCCATGTCAAGGCTTCCTCCGATTTGGGTTCTGCTGAAACGCCGCGTTTTGAATCGGCTGTGAGTTGCACTGCTCCGGCGGCTATGAAGTTTACCCCAAAAGTTCGTTCTGGTAGCTGTACTGATATTGGACCGAGGGGGTCTATGGATGATGAGCACATTCAAATAGATGATCTAGCTGCCCATCTTGGATTTGTGTTCAAGTATGCTATACCGAGTGCTTTTTATGCGGTTTTTGATGGTCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGGAGAATGCTATGAGATTGTTTTTTGAAGATGCTGATATGTTACAATCATATGATGCTGATGCCGTTTCTCTGAAGAGGTTGGAAGATTCTCATCGGAGAGCTTTTTTAGTTGCAGATCATGCCTTGGCTGATGAAAAGTGTGTTAGCAGTTCCTGCGGGACAACAGCGTTAACTGCACTTATACTTGGAAGGCATTTGCTGGTTGCGAACGCTGGTGATTGTCGAGCTGTTCTTTGTCGGCGAGGAGTTGCTGTTCAGATGACTGAAGACCACAGACCTAGTTATTTACCTGAACGCAGGAGAGTGGAGGAGTTAGGTGGTTTTATTGATGATGGGTATCTCAATGGCTATCTTTCAGTCACTCGTGCCCTTGGGGATTGGGACTTGAAACTTCCACTTGGTTCTGCGTCGCCTCTTATTGCTGAGCCAGATGTTAAAGTGGCCACATTGACAGAGGATGATGAGTTTTTGATCATTGGGTGTGATGGGATCTGGGATGTAATGTCATGCCAGGATGCAGTTAGTCTTGTACGGCGTGGATTAAGGAGGCATGATGACCCACAGCAATGTGCCAGAGAGCTAGTCAAGGAAGCATTGCGCCTACACACATCAGATAATCTCACTGTGATTGTTATTTGCTTGTCATCTGTTGAAACCATTGTTGAATCATGTCCACCACAAAGGCGAAGATTCAGAGCTTGCTCTCTGTCTGAAGAGGCCCGAAATAGATTGAGGAGTTTGCTAGAGGGAAACTGA 1170 0.4632 MVVETELICQQQTIPVLDVKYHLHVAQEHALKVEVSPSSNAGIPVFSHVKASSDLGSAETPRFESAVSCTAPAAMKFTPKVRSGSCTDIGPRGSMDDEHIQIDDLAAHLGFVFKYAIPSAFYAVFDGHGGPDAAAFVKENAMRLFFEDADMLQSYDADAVSLKRLEDSHRRAFLVADHALADEKCVSSSCGTTALTALILGRHLLVANAGDCRAVLCRRGVAVQMTEDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDLKLPLGSASPLIAEPDVKVATLTEDDEFLIIGCDGIWDVMSCQDAVSLVRRGLRRHDDPQQCARELVKEALRLHTSDNLTVIVICLSSVETIVESCPPQRRRFRACSLSEEARNRLRSLLEGN* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2749 389 SUPERFAMILY PP2C-like 75 353 IPR036457 -
Lja6g2749 389 SMART PP2C_4 72 350 IPR001932 -
Lja6g2749 389 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Lja6g2749 389 Pfam Protein phosphatase 2C 92 344 IPR001932 -
Lja6g2749 389 ProSiteProfiles PPM-type phosphatase domain profile. 82 352 IPR001932 -
Lja6g2749 389 Gene3D - 68 357 IPR036457 -
Lja6g2749 389 PANTHER PROTEIN PHOSPHATASE 2C 1 376 IPR015655 GO:0004722|GO:0006470
Lja6g2749 389 CDD PP2Cc 81 352 IPR001932 -
Lja6g2749 389 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 376 - -
Lja6g2749 389 SMART PP2C_SIG_2 97 352 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2749 Lja-Chr6 56513590 56515776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2749 1 388 PP2C-type Phosphatase Gene Family AT1G48040 57.538 1.12e-150 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2749 K14803 - gmx:100798957 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2749 6 56513590 56515776 Lja6g2749 6 56513590 56515776 ECH
Lja4g1400 4 12575992 12578101 Lja6g2749 6 56513590 56515776 PCT