Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2738 ATGGCAACGGCAGAGGCAGCTTCAGCTGGGCTTGGCCCAAGATATGCACCTGATGATCCTTCGCTTCCGCAACCGTGGAAGGGGCTGATTGATGGCAGTACTGGTCTGTTGTACTATTGGAATCCTGAAACCAATGTTACCCAGTATGAGAAGCCAGCTCCTTCGGGCCCAGCACCGGTTCCTTCTACGCCGAGCTTGGCGCCCATACCAGGGGCTCATTCAATGACGGCTGGTGGGATGGCCCAACAACAGCATGGGCAGCAGATGATGCAACAGCAACAGCAGGGGAGTTACCTTCCCCAACAACATGGCCAATCCATGCCGCAGCAGCAGCAGCAGAATTCTCTCGGGGCGCAGGTCACTCAGCCGCAGCAGCCCTCTCAGATTGCTCAATCCGCACAGCAGCAGAACTCACAGCTTGGACAGTCAGTGCCGCAACCTGGGTTCCACCAGGCCAGACCGCAGATGATGCAGCCCCAGGGACAACAACAATTCATGCAACCTCAAGGGCAGCAAATGCATCATCAGATGCCATCGCAGGGGGTCCGCCCCCAACATTTCGGGCAAGGAGCTTCACAGGATCATGGCGGCTCGCATATCGTACAACCACAGACACCGCAATTTACTCCCCAGAACATGCATTATATGGCATATCAACAAAACATGGTTACATCCAGGCAACCAAACTCGCAGCAGATTCAGCCTAACTCGTTTCCATCCGGGCAACCTAATTCCCAGCAGATTCAGCATAACATACATGGTCAGCCTTATGACAATCAACAAGATTTTAAAACAGGGTTTCCGAAGACAAAGGACACAGAGTTTAAAAATGGAAGCCAAGTTGGAGTTTCACCATCTCAGTATCAACAAAGGAGTGCGTTGCCGGTTCAAAACAACCAGAATGTCCCTGCTGAAGTTACTTCTGGTCAAGTGCCTAATGCGGGTGCTAATGCAGGCCAACCGCAACAGTTCAGGGGCTTTTCAGGCAGTGTGCAACAATCTCCCTCTGCAGTTCAGACACAGCAGGGTGGTTCTGATTCATTTTACCAACACGTTCCTAACTTTCAAAATCAAATGAACCCAGGAATGATGCATGGTCATCCATCTAATGTTCACGCTATTGGCCAAAAGATGGGACATGAAGACAAGTTACCTGGTAGAGCTGGTAATGAATATTACTATAACTCTAACAAAGAGATGCCGGCAATGGGTCGTCAGCAGGTGGATATGACACAAATGCCCATTTCAAGAAATCCCCAGGATAAGAGGATTGGCAACGCCCCTTTCCAAAATGTAATGCCTAGTGGAACTGGTATTGCGGGCAATGCTATGCATAACATGTTCACTCCTCCAATAGGAGGACCTTCACCTCTCTCAAGTAACTCCTTGACGAGGCCACCTCACATTGGATCTTCAGATGTTACCGATCTATCACCTGCTGAAATATACTGTCAGCAGCATGAAGTTACAGCAACGGGTGACAACATTCCACCCCCCTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATACTGAGAGAGATATATTCTGCTGGCTTCTCAAATCCCACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAGGGTCGAGACATAGTGGCAATTGCCAAGACAGGGTCTGGGAAAACATTAGGCTACATAATGCCTGCCTTCTCTCTTCTCAGACAGCGACACAATAATCCTCTTAATGGCCCAACTGTCTTGGTTTTGGCTCCCACACGTGAACTTGCAACACAGATCCAAGAGGAAGTCTTCAAATTTGGACGATCTTCAAGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAGTTAAAAGAGTTAGATCGGGGAGCAGAAATTGTTGTTGCCACACCTGGTCGGCTTAATGATATACTTGAAATGAAAAAAATTAACTTTGGGCAAGTTTCACTCCTCGTGCTTGATGAGGCTGATCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCGAGTGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAGTGTGGATGAGCTTGCTGCAAATAAGTCTATTACTCAGTACGTTGAAGTTGTCCCCCAAATGGAGAAACAGAGGCGTTTGGAGCAGATCCTCAGATCCCAAGAGCGAGGTTCTAAAATCATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGCACTATTGGTCGCAGTTTTGGGGCTGCTGCAATCCATGGAGACAAGTCTCAAGGTGAGAGAGACTATGTTTTAGGCCAGTTTCGGACTGGGAAGTCACCGATTTTGGTTGCCACTGATGTTGCTGCCCGTGGACTTGATATTAAGGATATAAGAGTGGTGATCAACTATGATTTCCCTACTGGAGTTGAGGACTATGTTCACCGCATTGGAAGAACTGGGAGGGCTGGTGCTACTGGAATGGCTTATACCTTTTTCTCTGAACAGGACTGGAAACATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCCAACCAGCATGTGCTTCCAGAGTTAAGACAGATAGCTTCGCGGGGTCCAGCAAACTTTGGAAAGGATCGGGCTGGGATGAATCGGTTTGACTCTGGTGGTGCTGTTGGTGGCCGCTGGGACAATGGTGGTCGTGGTGGCATGAGAGATGGTGGTGGTGGCTTTGGTGGTCGTGGTGGGATGAGGGACGGTGGCTTTGGAGGTCGGGGTGGTTTTGGTGGCCGGGGTGGCACGAGGGACGGTGGCTTTGGTGGTCGAGGGGCCATGAGGGATGGACCTGGTGGGAGGGATGGACCTGGTGGGCAAGGTGGGAGAGGTGATTTCTCTGCTGGTAGGGGAAACAGGGGTCGGGGATTTGGTGGCCCCCAAGGTGGTGGTCATGTTGGTCGGGGCAGGGGTGATCGTGGTCCCAATGATCGGTACAACATGGATGGGCGTGGACGGGGACGATTTGACAATAGGAGAGATGTTGCTTACAGAAGTAGAGGCAGAAGTCGTAGCCCTGAAAGAGTTCGAACATGGGACTACAGCAGAAGCAGAAGCCGCAGCAGTAGCCGTAGCAGAAGCAGAAGTAGGAGCTGGAGCAGGGGCCGTAGTAGAAGTCGCAGCCGGTCTCGCGGTCGTAGTCGCAGCTATAGCCGTAGTATCAGTCCGCGTCGCAGCCGTCGAAGTTATAGCCGCAGTCGCAGTCGCAGTCGCAGTTATGATAGGGGTGATAGGTCAGACAAACAGGTTTCTGATCAGAAGGATCTTAGGGCACCTGAAGCAGGAGCTTCTGATTCAAAAATGTTCACTGTAGATCCCAGCATCCAAGGGGGGAATTCATCTTTTGGAGCTGAACCTGTGGAGCAGCTACCTGTTGTTGGGAGTACTAACCCAGATAATCCTGAGGCTGCTGGAGACCTTAGTCATCAACCAGCTTCTGATATTTGA 3531 0.4993 MATAEAASAGLGPRYAPDDPSLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPSGPAPVPSTPSLAPIPGAHSMTAGGMAQQQHGQQMMQQQQQGSYLPQQHGQSMPQQQQQNSLGAQVTQPQQPSQIAQSAQQQNSQLGQSVPQPGFHQARPQMMQPQGQQQFMQPQGQQMHHQMPSQGVRPQHFGQGASQDHGGSHIVQPQTPQFTPQNMHYMAYQQNMVTSRQPNSQQIQPNSFPSGQPNSQQIQHNIHGQPYDNQQDFKTGFPKTKDTEFKNGSQVGVSPSQYQQRSALPVQNNQNVPAEVTSGQVPNAGANAGQPQQFRGFSGSVQQSPSAVQTQQGGSDSFYQHVPNFQNQMNPGMMHGHPSNVHAIGQKMGHEDKLPGRAGNEYYYNSNKEMPAMGRQQVDMTQMPISRNPQDKRIGNAPFQNVMPSGTGIAGNAMHNMFTPPIGGPSPLSSNSLTRPPHIGSSDVTDLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYIMPAFSLLRQRHNNPLNGPTVLVLAPTRELATQIQEEVFKFGRSSRVSCTCLYGGAPKALQLKELDRGAEIVVATPGRLNDILEMKKINFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKRLCDQLARTIGRSFGAAAIHGDKSQGERDYVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGMAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPANFGKDRAGMNRFDSGGAVGGRWDNGGRGGMRDGGGGFGGRGGMRDGGFGGRGGFGGRGGTRDGGFGGRGAMRDGPGGRDGPGGQGGRGDFSAGRGNRGRGFGGPQGGGHVGRGRGDRGPNDRYNMDGRGRGRFDNRRDVAYRSRGRSRSPERVRTWDYSRSRSRSSSRSRSRSRSWSRGRSRSRSRSRGRSRSYSRSISPRRSRRSYSRSRSRSRSYDRGDRSDKQVSDQKDLRAPEAGASDSKMFTVDPSIQGGNSSFGAEPVEQLPVVGSTNPDNPEAAGDLSHQPASDI* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2738 1176 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 652 660 IPR000629 -
Lja6g2738 1176 CDD SF2_C_DEAD 720 849 - -
Lja6g2738 1176 MobiDBLite consensus disorder prediction 1095 1122 - -
Lja6g2738 1176 MobiDBLite consensus disorder prediction 272 295 - -
Lja6g2738 1176 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 501 529 IPR014014 GO:0003724
Lja6g2738 1176 Pfam WW domain 22 52 IPR001202 GO:0005515
Lja6g2738 1176 SMART ww_5 21 54 IPR001202 GO:0005515
Lja6g2738 1176 MobiDBLite consensus disorder prediction 1 28 - -
Lja6g2738 1176 CDD WW 23 54 IPR001202 GO:0005515
Lja6g2738 1176 MobiDBLite consensus disorder prediction 998 1048 - -
Lja6g2738 1176 Pfam DEAD/DEAH box helicase 525 695 IPR011545 GO:0003676|GO:0005524
Lja6g2738 1176 MobiDBLite consensus disorder prediction 49 207 - -
Lja6g2738 1176 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 296 970 - -
Lja6g2738 1176 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Lja6g2738 1176 MobiDBLite consensus disorder prediction 886 1176 - -
Lja6g2738 1176 Gene3D - 16 56 - -
Lja6g2738 1176 Gene3D - 477 710 IPR027417 -
Lja6g2738 1176 MobiDBLite consensus disorder prediction 224 264 - -
Lja6g2738 1176 MobiDBLite consensus disorder prediction 77 207 - -
Lja6g2738 1176 Gene3D - 711 881 IPR027417 -
Lja6g2738 1176 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 296 970 - -
Lja6g2738 1176 MobiDBLite consensus disorder prediction 1130 1144 - -
Lja6g2738 1176 SMART ultradead3 520 723 IPR014001 -
Lja6g2738 1176 MobiDBLite consensus disorder prediction 1049 1094 - -
Lja6g2738 1176 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 879 IPR001650 -
Lja6g2738 1176 MobiDBLite consensus disorder prediction 326 346 - -
Lja6g2738 1176 MobiDBLite consensus disorder prediction 224 295 - -
Lja6g2738 1176 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 706 IPR014001 -
Lja6g2738 1176 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Lja6g2738 1176 SMART helicmild6 760 840 IPR001650 -
Lja6g2738 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 855 IPR027417 -
Lja6g2738 1176 Pfam Helicase conserved C-terminal domain 732 840 IPR001650 -
Lja6g2738 1176 SUPERFAMILY WW domain 14 53 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2738 Lja-Chr6 56391328 56399772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2738 489 860 Eukaryotic Initiation Factors Gene Family AT3G19760 35.121 5.87e-66 227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2738 6 56391328 56399772 Lja6g2738 6 56391328 56399772 ECH