Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2728 ATGGAACAGTATGAGAAGGTTGAGAAGATCGGCGAAGGAACCTACGGCGTCGTTTACAAGGCTCGCGACCGCGTCACCAACGAGACCATCGCGCTCAAGAAGATTCGTCTCGAGCAGGAGGATGAAGGTGTTCCCAGCACCGCCATACGCGAGATTTCACTCCTCAAAGAAATGCAGCACAGGAACATTGTTAGGTTGCAGGATGTAGTGCACAGCGAGAAGCGATTGTATCTGGTATTTGAGTATTTGGACTTAGATCTGAAGAAGCACATGGATTCATCTCCTGAGTTTGTGAAAGACCCGCGACAAGTAAAGATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCGCATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGACCGTCGTACTAATTCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGCATTCCTGTCAGGACATTTACTCATGAGGTGGTGACATTGTGGTACAGAGCTCCAGAAATATTGCTTGGATCTCGTCATTATTCCACCCCTGTTGATGTTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAATAGACGACCTCTATTCCCTGGAGACTCTGAGATTGATGAATTGTTTAGAATATTCAGAATCCTGGGAACACCAAATGAGGATACATGGCCTGGAGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAGTGGCCATCCAAGGACCTGGCATCTATGGTTCCAAATCTTGATCCAGCTGGTCTTAATCTTCTTTCTAGTATGCTTTGCTTGGATCCCACCAAAAGAATCACTGCCAGGAGCGCTGTGGAGCATGAATACTTCAAAGACATTAAATTTGTACCATGA 885 0.4441 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEIDELFRIFRILGTPNEDTWPGVTSLPDFKSTFPKWPSKDLASMVPNLDPAGLNLLSSMLCLDPTKRITARSAVEHEYFKDIKFVP* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2728 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Lja6g2728 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2728 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Lja6g2728 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Lja6g2728 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2728 294 PANTHER - 3 291 - -
Lja6g2728 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Lja6g2728 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2728 294 PANTHER CELL DIVISION PROTEIN KINASE 3 291 - -
Lja6g2728 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lja6g2728 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2728 Lja-Chr6 56321128 56325927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2728 1 294 Core Cell Cycle Gene Families AT3G48750 84.354 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Lja6g2728 Pkinase 5.7e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2728 K02206 - gmx:100782865 590.497