Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2727 ATGTGCAGCATCTTTGTCTCAACCATGGACAACAATTACCAATTTGGAGATTTAACTGACATACTCAGGGCTAGTGGTGGAACTTCATCATCACCTGAACCACCTGCACCACCACAACCACCACATCATCATCAAAATCATTGGCATCAGCATCAGAATCAGCATCAGCTTCAGCATCAGTTCTCTTCTGATCCTATGATTTTCAACAATTTTGGTGATCCATTCTCAACCTTCAGAGATCCTCTTCTTCTGCAAGACCTTGATATTCCTTCAGTTTCTTCCTACTTCAATACTTCTACAACAGACTCTGGGGGTTTGGAACAAGCAGTTGTTGCAGCTAGTGGTTTTGGTGGTGTTATTAGTGGTAATAGTGCTACTAATAATACAAATGTTTCTGCTTCTTCTGTTTTTGCTCACAAGGTGGTTGAAGATAATCATGACATGATGAGGAGGCCTTGTAAGAACATATTCTCAAACATGATTCAGATCTCTCCCAATTGCAATGCAAAGTTACCTGGCAGCTATGATTCTTCTTCAACTTCTTCCCCAGCCCCAAGGCCAATTAAACCTTCTGCTGTGATTTCACCAAACATCAATATTAATGCTGCTAACACTGAAGGAGTGCAGATCTCATCTCCACGGAATCCGGGTCTCAAAAGAAGGAAGAACCAGGCGAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTATTATAGATGCAGTAGCTCAAAGGGTTGTTCTGCAAGGAAGCAAGTTGAGAGGAGCAGGACAGACCCAAACATGTTGGTTATTACTTACACTTCAGAGCACAACCATCCATGGCCAACTCAAAGGAATGCCCTGGCTGGTTCAACAAGATCCCAACCATCCAAGAGCAACAATGCTGCTTCCAAGAGCTCAGAAATCTTTGACTCCCAAAAGGGAACATTAACAAAACCAAAGGAAGAGCATGAGCAAGAGAGCAACAGTGAAGGCAATAACTCCCCTGGTGTTGCAGCTGGTAACTCATCAAACAGTGTGAAGGAAGAGATGGAAGACATGGAGATGAAGCAACTTGAAAATATGGAAGATGGAGAATTCAGTGATGGAATTGGAATCCCTTACAAGCCATCTATGATTGGTAGCAACAACCAACAATCTGAGGATTTCTTTGCAGAATTGGGGGAAATTGAAGCTGATCCATTAAACCTTTTGTTCACACAAGGCTTTGGTCATGCACCTGATGAGCATCAAAGAGAATCCACCAAGGCCATAGACCCATTCCATATCTTTGATTGGTCCAACACCACCAACACCAACTCATTTGATGAACCTAATAAGAGAAGGTTATAG 1431 0.4277 MCSIFVSTMDNNYQFGDLTDILRASGGTSSSPEPPAPPQPPHHHQNHWHQHQNQHQLQHQFSSDPMIFNNFGDPFSTFRDPLLLQDLDIPSVSSYFNTSTTDSGGLEQAVVAASGFGGVISGNSATNNTNVSASSVFAHKVVEDNHDMMRRPCKNIFSNMIQISPNCNAKLPGSYDSSSTSSPAPRPIKPSAVISPNININAANTEGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKSNNAASKSSEIFDSQKGTLTKPKEEHEQESNSEGNNSPGVAAGNSSNSVKEEMEDMEMKQLENMEDGEFSDGIGIPYKPSMIGSNNQQSEDFFAELGEIEADPLNLLFTQGFGHAPDEHQRESTKAIDPFHIFDWSNTTNTNSFDEPNKRRL* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2727 476 MobiDBLite consensus disorder prediction 291 340 - -
Lja6g2727 476 MobiDBLite consensus disorder prediction 22 59 - -
Lja6g2727 476 MobiDBLite consensus disorder prediction 356 373 - -
Lja6g2727 476 MobiDBLite consensus disorder prediction 172 186 - -
Lja6g2727 476 SUPERFAMILY WRKY DNA-binding domain 245 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g2727 476 MobiDBLite consensus disorder prediction 205 225 - -
Lja6g2727 476 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2727 476 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2727 476 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 15 462 - -
Lja6g2727 476 Pfam WRKY DNA -binding domain 249 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2727 476 Gene3D WRKY domain 221 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g2727 476 MobiDBLite consensus disorder prediction 264 379 - -
Lja6g2727 476 MobiDBLite consensus disorder prediction 172 192 - -
Lja6g2727 476 MobiDBLite consensus disorder prediction 341 355 - -
Lja6g2727 476 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 462 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2727 Lja-Chr6 56305643 56309423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2727 1 476 WRKY Transcription Factor Family AT1G30650 41.922 2.86e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja6g2727 WRKY 2.7e-25 CL0274