Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2715 ATGGGTGCTCCCAAGCAAAAATGGACTGCTGAAGAGGAAGCAGCACTTAAAGCTGGGGTGGTCAAGCATGGAGTTGGTAAATGGCGTACGATACTCAAGGATCCGGAGTATAACAGTGTCTTATATCTGCGGTCGAATGTGGATCTCAAGGATAAATGGAGGAATCTGAGTGTGATGGCAAATGGATGGACCTCCAGGGAAAAGTCTAGGTTGTCAGTCAGAAGGGTGCATCAGAACGCAAAACAGGACGACAACTCTATGGCTGTCACTGTTGTTCCAAGTGATGAAGAAATTGTTGATGTTAAGCCTCTTCAAGTTTCAAGAGATATGGTTCAGGTTCCTGGTCCAAAAAAGTCTATTGTAAGGTTGGATAACCTTATACTGGAAGCAATAACTAGTTTGAACGAGCCTGGTGGTTCTAACAAGACAAATATTGCTGCTTACATAGAGGACCAATACTGGGCGCCGTCAGACTTCAAAATGTTGTTGTCCGCAAAATTGAAGTTTTTGACAGCTAGTGGAAAACTGATCAAGGTAAAGCGCCGGTATAGGATTGCACCTACTACTCCAGCATATCCAGAGAGAAGAAGAAACTCATCCATGTCATTATTAACTGGGAGGCAGAAAGCCTCTGTGAACCTTGAGAAGGATGAGGCCAACATCCAGACAAAGTCTCAGATAGATGTAGAAATAGCAAGGTTAAGGTCCATGACTCCACAAGAAGCAGCTGCAGTTGCTGCTCGAGCAGTCGAGGAAGCAGAAGCCGCCATAGCAGAAGCTGAAGAGGCAGCCCGAGAGGCAGAGGCTGCAGAAGCTGAGGCGGAGGCTGCAGAAGCTTTTGCACAAGCTGCAATGAAGACCATGAAAGAGAGAAACACCCCAAAGAAGATTATACCTTCTTGA 903 0.4585 MGAPKQKWTAEEEAALKAGVVKHGVGKWRTILKDPEYNSVLYLRSNVDLKDKWRNLSVMANGWTSREKSRLSVRRVHQNAKQDDNSMAVTVVPSDEEIVDVKPLQVSRDMVQVPGPKKSIVRLDNLILEAITSLNEPGGSNKTNIAAYIEDQYWAPSDFKMLLSAKLKFLTASGKLIKVKRRYRIAPTTPAYPERRRNSSMSLLTGRQKASVNLEKDEANIQTKSQIDVEIARLRSMTPQEAAAVAARAVEEAEAAIAEAEEAAREAEAAEAEAEAAEAFAQAAMKTMKERNTPKKIIPS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2715 300 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Lja6g2715 300 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Lja6g2715 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lja6g2715 300 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 295 - -
Lja6g2715 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lja6g2715 300 SUPERFAMILY "Winged helix" DNA-binding domain 117 196 IPR036390 -
Lja6g2715 300 Pfam linker histone H1 and H5 family 124 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja6g2715 300 Coils Coil 243 287 - -
Lja6g2715 300 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja6g2715 300 Gene3D - 117 196 IPR036388 -
Lja6g2715 300 SMART sant 4 59 IPR001005 -
Lja6g2715 300 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lja6g2715 300 Gene3D - 8 87 - -
Lja6g2715 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja6g2715 300 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2715 Lja-Chr6 56139003 56145957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2715 1 237 Single Myb Histone (SMH) Gene Family AT1G49950 62.140 1.98e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g2715 Linker_histone 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2715 K09422 - gmx:100780698 383.645