Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2712 ATGGCTAGGAGCATGGAAGAACTTGCTTCAGACGATGAAGTAGTAGGAGAAATGATGCCAAATAATGGAGACCCTGATCATCATCATCATCATGAACCTTTTTCAAATGATAGTAGAGACTCTGTTGATTCTGTAACTGGTGTTATGGAAAGGTCCATTCACCACTGCATACTTTCCGACCTTCACTTGCTTGATTGCAGCATTTGCTCTGAACCTTTAACTGTTCCAGTGTTCCAGTGCAAAAATGGCCACATTGCTTGCTCTGCATGCTCTGCTAATCTGTGTGGCACGTGCTTCACTCCCATTAACTTCAGTCGTTGCAGAGCCATTGAGAATGTATTGCAGTGCATCAAAGTAACATGCCAATATGCAAATTTCGGTTGCAAAAAGACAATGAGTTACAATGAAAAGAAGAACCATGAAGAGGAATGCATCTATGTACCATGTTTCTGTCCAATTTCAGAGTGTAACTTTGTAGCCTCATCCAAATTGTTATCCACTCATGTCAGAGAAAAACATGAGGCTTCTAGAATCCAATTTTCATATGATCACTCTTTCTTGGTGTCCTTCGATGATGATGTTCGGGAACCATTTGTTTTTCAAGAGCAAAGTGATGGCACATTGTTTGTTCTCAACAAGGATATTTGGCGTTTGGGATTTGTGGTCAGCATTACCTGCATTGGTCCTACAATATTTAACTCTTGTTCTGAGTCAGGGTATCCTTATGATATCTTGGCTAAGTCTCAAGGATGTGAAGTGAAGTTGGAGTCTATCACTAAGAACGTTCTGAGAAGAACTTTGGCTCTTCTTTCATCAGTGTACCTTGTGATTCCGTTTGATTTGGATTCTCCTGAGCCTCTCAATCTGGAAATTTGCATAAGGAACAGACACACCCCATTGTTTCCCATTTCCCGGCCCATACTTAGTTTCATCGTTGACAACAACATTGCCACCCCCAAAGTCCAGTGTTCCTTTTTCACTCACTCCTTCTTGAAGCGAAGTTCCAAGTTGAAAGCTCTCTTCGTCTCTTCAGGGGGGTGCTGCTAG 1047 0.4183 MARSMEELASDDEVVGEMMPNNGDPDHHHHHEPFSNDSRDSVDSVTGVMERSIHHCILSDLHLLDCSICSEPLTVPVFQCKNGHIACSACSANLCGTCFTPINFSRCRAIENVLQCIKVTCQYANFGCKKTMSYNEKKNHEEECIYVPCFCPISECNFVASSKLLSTHVREKHEASRIQFSYDHSFLVSFDDDVREPFVFQEQSDGTLFVLNKDIWRLGFVVSITCIGPTIFNSCSESGYPYDILAKSQGCEVKLESITKNVLRRTLALLSSVYLVIPFDLDSPEPLNLEICIRNRHTPLFPISRPILSFIVDNNIATPKVQCSFFTHSFLKRSSKLKALFVSSGGCC* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2712 348 MobiDBLite consensus disorder prediction 22 38 - -
Lja6g2712 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 169 IPR013083 -
Lja6g2712 348 ProSiteProfiles Zinc finger SIAH-type profile. 116 174 IPR013010 GO:0008270
Lja6g2712 348 MobiDBLite consensus disorder prediction 1 42 - -
Lja6g2712 348 SUPERFAMILY TRAF domain-like 117 294 - -
Lja6g2712 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 54 298 - -
Lja6g2712 348 Pfam Seven in absentia protein family 106 182 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lja6g2712 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 54 298 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2712 Lja-Chr6 56114718 56121949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2712 63 294 C3H Transcription Factor Family AT2G41980 25.703 1.06e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2712 K04506 - gmx:100797881 228.409