Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2687 ATGAATTTGTCTGGAGGTGCTGATGGTGCACCTGCTGATGAACAAGAGGTTCAGAGCAAAGGCAAACAAGCCTTTCGTCATTCTCCCAGTCATACAACTCACCTTGAAGCAATATTCAAAAGATGCCCCTTCCCTACTACAAGTGAAAGGAATAAGATAGCAACAGAGCTCGGGCTTGAACAGAAACAAGTGCGGTTTTGGTTTCAGAACAAGAGGAGTCAATCAAGGGCAAATGTACTGCAAGCAGAGAAGAATGCTCTTTTTCATGAAAACGAAAGACTGAGAAGTGAAAATATCCAACTCCGGGAGGCACTGAGGAACCTAAGTCATTGGGTAACATATGGTCATCAACACCAATACCATAGAGTGCATCAACAACATTCTTCGAATCAACCCGAGAAGGTGACTAAACGTCTTGAACGGAACGTGTCTAATGGAAACCCAATGCCACAGTCACAACCAGGTCTAGCCGCTGGATCTTCATATGACTCGCCACTTGAAAAAACTCTCACATTGGTGGTTGAGAATGCTATTGATGTTGATTCTTCATCAACAAGTACTTCAGAAATTCTCGCTGAAAATGGGAATGTGTTGTTACCAAAACCAACGAGCGAAGTGGAAAAAGAGAAAATGTTGGAGGCTGGAATCGCTGCTAAGGATGAATTACTTCTCCTCATCAACACTGATCTCCCCTTATGGATTAGATCTTGTTCATATTACCAGAGACTTGTTCTTCATTCAGAAAACTATGAACAGTTTTTTCCTAGGGCCAATCACTTCAAGAATTCCAAACCACGTGTGGAAGCATCAAAAGACTCACGAATAGTGAGAATGAAGCCCATGGACTTGGTGAACATGCTTCTAGATTCGGAAACATGGGCAAGTGTATTCTCGACGCTCATTACGCAAGCACACACAATTGAAGTGCTTGAAAGTGGTTCAGCTGAAAATCGAAGTGGAGCTTTGCTACTGATGCATGAAGAGATGCATGTTCTTTCACCTTTTGTGCCATCTCGTGAGTTTTACTTCATACGCTATTGTGAACAAGTTGAAGCTGGTATTTGGGTGATAGCAGATGTATCTTTTGATTACCTGAAAGAGGAAGGCCCTCATGGTCTCACTTGGAGGTTTCCTTCTGGTTGCATGGTTCAAGAATTATCTGATGGCTTTACTCAGGTTTCTTGGATTGAACATGTGCAAGTGGACGACGACAACGGTGGCAAAATCCTATCACACCCTTTGTTTAGAGATCTTGTTCACAGCACTATTGCATATGGAGCAGAAAGATGGGTCATGGAGCTTGAAAGAATGTGCTATAGATTTACTTCTTCTGAATCTGAATACATATATGCTAATAATTACCCCAAAAGAGTGATGATTAAACCACTAGAAAAGTGGAGGGTGATAAACCTTGCTCAACAAATGGTGAGCAACTTTTGTGGCTTTTTAAGCATGTCGAGTAAGTTGGACGAACCAGGAGAATTACTGAACGAGGATAATGCGATTAGGATCTGTGTTCAGAATATGACAAATAAGGCAGGCCAACCAAATGGCATGGTTATTGAAACTATTGCTTCCTCCTTTTGGCTTCCTATCCCTTCCCAAGTTCTCCATGAATTCTTCAAAGATCCATTTATGCGTCATAAGTGGGATCCTAGTTGCTATGGAAATCCTGTGCATGAGATTGTGTACATCTCAACTGAAACTCACCCTAACAACTATATATCACTTCTCCAGCCTATGAACTCTACTGCAAATGGTGATTATGTGATTCTGCAAGAAAGTTTCATGGGTCCCCTTGGATCATATATTGTATATAGTCCGGTTATCGTACCGGAGTTTCATATGGCTCTCAATGGAGGGCATCCATCAATGGTAATGCTTCTTCCATCAGGCATTGTCATCTCAGAAGATTACAAGAAACGTTCTTTGTGGAATGCTCCAAGCTGTAGTAATGGAAACAGAGGTTCAGTGTTGACCATGACTTACCAAACACTTAAATGTGGTCCTGTTGCATTCAATAAAGAATCTGAGGAATCTGCTAGTTCACTCGTGATCTCAACAATCCAAAACATCAAGGATGCTTTGATCAGTGGTTATGAGTCTGAATAA 2112 0.4152 MNLSGGADGAPADEQEVQSKGKQAFRHSPSHTTHLEAIFKRCPFPTTSERNKIATELGLEQKQVRFWFQNKRSQSRANVLQAEKNALFHENERLRSENIQLREALRNLSHWVTYGHQHQYHRVHQQHSSNQPEKVTKRLERNVSNGNPMPQSQPGLAAGSSYDSPLEKTLTLVVENAIDVDSSSTSTSEILAENGNVLLPKPTSEVEKEKMLEAGIAAKDELLLLINTDLPLWIRSCSYYQRLVLHSENYEQFFPRANHFKNSKPRVEASKDSRIVRMKPMDLVNMLLDSETWASVFSTLITQAHTIEVLESGSAENRSGALLLMHEEMHVLSPFVPSREFYFIRYCEQVEAGIWVIADVSFDYLKEEGPHGLTWRFPSGCMVQELSDGFTQVSWIEHVQVDDDNGGKILSHPLFRDLVHSTIAYGAERWVMELERMCYRFTSSESEYIYANNYPKRVMIKPLEKWRVINLAQQMVSNFCGFLSMSSKLDEPGELLNEDNAIRICVQNMTNKAGQPNGMVIETIASSFWLPIPSQVLHEFFKDPFMRHKWDPSCYGNPVHEIVYISTETHPNNYISLLQPMNSTANGDYVILQESFMGPLGSYIVYSPVIVPEFHMALNGGHPSMVMLLPSGIVISEDYKKRSLWNAPSCSNGNRGSVLTMTYQTLKCGPVAFNKESEESASSLVISTIQNIKDALISGYESE* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2687 703 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 697 IPR042160 -
Lja6g2687 703 Gene3D - 8 93 - -
Lja6g2687 703 SUPERFAMILY Bet v1-like 208 440 - -
Lja6g2687 703 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Lja6g2687 703 ProSiteProfiles START domain profile. 204 443 IPR002913 GO:0008289
Lja6g2687 703 CDD homeodomain 26 76 IPR001356 GO:0003677
Lja6g2687 703 Pfam Homeodomain 27 76 IPR001356 GO:0003677
Lja6g2687 703 Pfam START domain 217 438 IPR002913 GO:0008289
Lja6g2687 703 SMART HOX_1 20 82 IPR001356 GO:0003677
Lja6g2687 703 SUPERFAMILY Homeodomain-like 15 76 IPR009057 -
Lja6g2687 703 MobiDBLite consensus disorder prediction 1 32 - -
Lja6g2687 703 MobiDBLite consensus disorder prediction 142 161 - -
Lja6g2687 703 Gene3D - 259 414 IPR023393 -
Lja6g2687 703 SMART START_1 213 440 IPR002913 GO:0008289
Lja6g2687 703 CDD START_ArGLABRA2_like 208 438 - -
Lja6g2687 703 Coils Coil 77 104 - -
Lja6g2687 703 SUPERFAMILY Bet v1-like 463 665 - -
Lja6g2687 703 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Lja6g2687 703 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2687 Lja-Chr6 55933100 55945423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2687 16 696 Homeobox Transcription Factor Family AT1G73360 34.648 5.08e-128 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja6g2687 START 1.2e-28 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2687 K09338 - gmx:100794552 581.637