Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2671 ATGACTACCCGCTTCGTGTTCGAACCTCCCAGCGACGAAGAAATCGAATATGAAGAAGAAGAGCGCAAGGGAGGGTCAGAATCAGAAAAAGAGCGCAAGGAATCGGCACAGTCTCCGTGGAACTTCGCCAAGTACACGGAATCCGTGGCGGAGGAATACGCTCGCAGGAACACCACCTCAATCGACCACAAAATCTCCAACGCCCTTCTCAAACACCACCGCCGTATTCCTATTCCTATTCCTGACTCCGACCCTGATCATCAAGAAGATTATAGACCGGAAGAAGAAGAAGATGAGGGCAATGCTGATGCTGGCGATGACGACAAGTCTTTTTTTTCTCCTTCTGATGGAATCTCTTTCCATGCTGATTCCTTCTTGCACCTCAATTTGTCACGCCCTTTACTCCGGGCTTGTCAGGCCTTGGGCTATATTCATCCAACACCAATTCAGGCCGCTTGCATACCATTGGCATTGAGTGGTCGTGATATATGTGCAAGTGCCATTACCGGCTCAGGGAAGACTGCTGCATTTGCACTACCCATTTTAGAGAGGTTGTTGTTCCGTCCAAAGCAAATGCGTGCAATTAGTGCCCTTTGTCTTACCCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATGGAGAGTCTTGCTCAGTTTACTGATATAAGGTGCTGCCTCATTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCCTTGAGATCAATGCCAAACGTTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAACTCTATGTCGGTGGATTTAGACGATCTTTCTGTTTTAATCCTTGATGAGGCAGATCGTCTTTTAGAGCTTGGATTTAATGCTGAAATTCAAGAACTTGTTCGCATGTGTCCCAAAAAAAGGCAGACCATGCTGTTTTCAGCAACCATGACTGAGGAGGTTAACGAACTTATTAAGCTTTCCCTGTCAAAACCCTTGCGTCTTTCTGCTGATCCATCTGCAAAACGGCCAGCAAGTTTGACAGAAGAGGTGGTTAGAATACGAAGAATGCGGGAAGTAAATCCAGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACGTCTAAAGTGATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGAATTGAAAGCTGCTGAGCTTCATGGAAATCTCACTCAAGCCCAACGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAGGTGGATTTTTTGGTGGCAACTGATGTGGCTGCTCGTGGCCTTGATATTATGGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGAAGGATGTGCTGTCACATTTGTTACCGATAATGACCGGTCACTTTTAAAAGCCATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCACTGTTGCAGAGCAATCTATACACAAGTGGTCTCAAATAATTGATCAGATGGAGGGCCAAATTGATGAAGTACTTCAAGAAGAGAGGGAAGAAATAGCCCTGAGGAAAGCTGAAATGGAGGCCGCAAAGGCTGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGGGAAGAGGCTTGTTGCTAAAGCAGCAAAGGATTCCATGGATAAGGATAATAGTTCTCGAAAGGAGGTCCTTAGTGCCGAACAAGCCGAAGAACTCAGAATGAAGGAAAAGAAGAAGCGAGAGCGAGAGAAAAATTTACCTAGAAAGAAGCGCAGAACTTTGGAGGCAGCTAGAGAGATGTTGGAGGATGAGGAGGATCATGATGACAAGGCAATAGAAGGTAAGGGAGCAAATAAGAAAGAAAAAAGCGGAATTTCACTTGTTGATATTGCTTACCGACGAGCAAAAGCAGTGAAGGCTGTCAAGAGGGCACTAGATTCTGGCAAGATTGTGAAGAAGCCTGTTAAACTGAAATCTAGCCATTCCTCGCGAAAGACTCCTTCAAAGCCGGAAGGTATGCGGGATCTATTCGAGTCTGAGATGAAGGATAAAAAACCAAGAAAAGGAGGTCTTGGAGCAGGAAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGGTATAAGCGCAAGTAA 2196 0.4549 MTTRFVFEPPSDEEIEYEEEERKGGSESEKERKESAQSPWNFAKYTESVAEEYARRNTTSIDHKISNALLKHHRRIPIPIPDSDPDHQEDYRPEEEEDEGNADAGDDDKSFFSPSDGISFHADSFLHLNLSRPLLRACQALGYIHPTPIQAACIPLALSGRDICASAITGSGKTAAFALPILERLLFRPKQMRAISALCLTPTRELAVQVHSMMESLAQFTDIRCCLIVGGLSTKVQEAALRSMPNVVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFNAEIQELVRMCPKKRQTMLFSATMTEEVNELIKLSLSKPLRLSADPSAKRPASLTEEVVRIRRMREVNPEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAELKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIMGVQTVINFACPRDLTSYVHRVGRTARAGREGCAVTFVTDNDRSLLKAIAKRAGSKLKSRTVAEQSIHKWSQIIDQMEGQIDEVLQEEREEIALRKAEMEAAKAENMIAHREEIFSRPKRTWFVTEKGKRLVAKAAKDSMDKDNSSRKEVLSAEQAEELRMKEKKKREREKNLPRKKRRTLEAAREMLEDEEDHDDKAIEGKGANKKEKSGISLVDIAYRRAKAVKAVKRALDSGKIVKKPVKLKSSHSSRKTPSKPEGMRDLFESEMKDKKPRKGGLGAGKKSKSSFKSKSRYKRK* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2671 731 SMART ultradead3 142 343 IPR014001 -
Lja6g2671 731 PANTHER RNA HELICASE 35 254 - -
Lja6g2671 731 MobiDBLite consensus disorder prediction 73 110 - -
Lja6g2671 731 MobiDBLite consensus disorder prediction 609 643 - -
Lja6g2671 731 Coils Coil 501 548 - -
Lja6g2671 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 478 IPR027417 -
Lja6g2671 731 Gene3D - 88 330 IPR027417 -
Lja6g2671 731 MobiDBLite consensus disorder prediction 685 711 - -
Lja6g2671 731 Gene3D - 352 655 IPR027417 -
Lja6g2671 731 MobiDBLite consensus disorder prediction 569 602 - -
Lja6g2671 731 CDD DEADc_DDX27 134 329 - -
Lja6g2671 731 CDD SF2_C_DEAD 340 472 - -
Lja6g2671 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 328 IPR027417 -
Lja6g2671 731 PANTHER RNA HELICASE 279 710 - -
Lja6g2671 731 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 502 IPR001650 -
Lja6g2671 731 SMART helicmild6 378 463 IPR001650 -
Lja6g2671 731 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 274 282 IPR000629 -
Lja6g2671 731 MobiDBLite consensus disorder prediction 89 104 - -
Lja6g2671 731 Pfam Helicase conserved C-terminal domain 361 463 IPR001650 -
Lja6g2671 731 MobiDBLite consensus disorder prediction 569 649 - -
Lja6g2671 731 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Lja6g2671 731 Pfam DEAD/DEAH box helicase 147 317 IPR011545 GO:0003676|GO:0005524
Lja6g2671 731 MobiDBLite consensus disorder prediction 21 37 - -
Lja6g2671 731 MobiDBLite consensus disorder prediction 663 731 - -
Lja6g2671 731 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 328 IPR014001 -
Lja6g2671 731 Coils Coil 587 607 - -
Lja6g2671 731 MobiDBLite consensus disorder prediction 1 39 - -
Lja6g2671 731 PANTHER BNAA01G17110D PROTEIN 279 710 - -
Lja6g2671 731 PANTHER BNAA01G17110D PROTEIN 35 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2671 Lja-Chr6 55779636 55785841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2671 91 485 Eukaryotic Initiation Factors Gene Family AT1G72730 32.581 1.07e-54 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2671 K13181 - gmx:100776684 1003.82