Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2667 ATGCAACACCGTACAAACTGCCATGGCAAGTACTGTTGCGAGACTTCTCTGCCCACACACTTTGCTGAGTACAACGCAACAATGGAGAACCTAATCAGCATGAATCACGCCATGAGGAGCAGTAATCAATGCAGTTACGCGGTGATTGCATCACTACAATCATATTATGAATACTGGAACGACGGTTATGCTTACCAGTACGATGATTCAAGTATAGTTCGTGAAATGAAGCATTTACATCATGTTCCTGCGGTGCTTGAGTGGGAAATTTCAAAAAACATGTCAATCAATTCCACCCAGCTCAAGGGTGGAAGAGGAAATTCATCTTCCTACTACTGCTATACCTCTAATGTTACTTCTTCACGCTCAGGTTGGAGATGTTTATGCAGAGATTCGTTCTATGGCAACCCCTACATTGCTGGAGGCTGTGTCGAAAATGAATATCGGGAAACACACAAATCCCGCGCCAAAGTTATAATTAAAGTTATAAAGTGGGTCTTAATAGGAATTTTTTCAATCCTTGGATCCATCATTTTCGCCCTTGGTTTTTGGCGGTTGTTCAAAGTTCTAAGGAGAATTATAATAAATAAACGCAGAGAAATGTTCTTCAAACGAAATGGAGGTTTGTTATTAGAACAAAGATTGTCTTCAGGTGAAGTTAATGATGACAAAGTTAAACTTTTCAACCTAAGGGATTTAAAGAAGGCCACAGATAACTTTAATGTGGACAGAGTACTTGGAAAGGGAGGTCAAGGTACCGTTTACAAAGGCATGTTGGTAAATGGGACAATTGTTGCTGTGAAGAAGTTTAAAGTCGAAGGAAATGTTGAAGAATTCATCAATGAATTTGTCATTCTTTCACAGATTAACCATCGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACAGAGATCCCTTTGCTTGTCTATGAATTCATTCCTAATGGCAACCTTTATGAATATTTGCATGGACAGAATGATGAGCTGTCAATGACATGGGACATGCGCTTGAGAATTGCAGCTGAAATTGCAGGAGCTTTGTTTTACTTACATTCAGCTGCTTCTCATCCCATTTATCACAGAGACATCAAATCCTCAAATATATTGCTCGATGGTAAGTATAAGGCAAAAGTAGCAGATTTTGGCACATCAAGAATGATTTCCATTGAAGCTACTCACCTCACTACAGTTGTCCAGGGAACTTTTGGATACTTAGACCCTGAATATTTCCATACTAGTCAATTTACAGAAAAGAGTGATGTCTACAGCTTTGGGGTGGTTCTTGTTGAACTTTTAACTGGGCAAAAGCCAATATCTTTGCTGAGGCCACAAGAAGCCAAAAGTTTAGCTCCATATTTTGTTCTCTGCCTGGAGGAAAATCGTCTGTTAGATATCATTGACGAAAGGATCATGGAAGAAGGGGAGAACCAACATATCATTGCAATTGCCAATCTTGCAAGTAAATGCTTAGAGTTGAATGGGAAAAAAAGGCCAACAATGAAAGAAGTGGCAATGGAATTAGATGGGACTCGAAAATTGGTTGAAATGAATTCTAATAAACAGGAACATCTGATGCACTTAGCATCACTTAGCATCTGTTAA 1605 0.3907 MQHRTNCHGKYCCETSLPTHFAEYNATMENLISMNHAMRSSNQCSYAVIASLQSYYEYWNDGYAYQYDDSSIVREMKHLHHVPAVLEWEISKNMSINSTQLKGGRGNSSSYYCYTSNVTSSRSGWRCLCRDSFYGNPYIAGGCVENEYRETHKSRAKVIIKVIKWVLIGIFSILGSIIFALGFWRLFKVLRRIIINKRREMFFKRNGGLLLEQRLSSGEVNDDKVKLFNLRDLKKATDNFNVDRVLGKGGQGTVYKGMLVNGTIVAVKKFKVEGNVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLYEYLHGQNDELSMTWDMRLRIAAEIAGALFYLHSAASHPIYHRDIKSSNILLDGKYKAKVADFGTSRMISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGQKPISLLRPQEAKSLAPYFVLCLEENRLLDIIDERIMEEGENQHIIAIANLASKCLELNGKKRPTMKEVAMELDGTRKLVEMNSNKQEHLMHLASLSIC* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2667 534 CDD STKc_IRAK 246 510 - -
Lja6g2667 534 Gene3D Transferase(Phosphotransferase) domain 1 314 531 - -
Lja6g2667 534 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 7 519 - -
Lja6g2667 534 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 7 519 IPR045274 GO:0007166
Lja6g2667 534 SMART serkin_6 240 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2667 534 ProSiteProfiles Protein kinase domain profile. 240 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2667 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672|GO:0006468
Lja6g2667 534 SUPERFAMILY Protein kinase-like (PK-like) 223 507 IPR011009 -
Lja6g2667 534 Pfam Protein tyrosine and serine/threonine kinase 242 508 IPR001245 GO:0004672|GO:0006468
Lja6g2667 534 Gene3D Phosphorylase Kinase; domain 1 208 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2667 Lja-Chr6 55687384 55692837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2667 126 512 Receptor kinase-like Gene Family AT1G69730 57.426 2.90e-156 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja6g2667 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2667 - - lja:Lj0g3v0205339.1 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2667 6 55687384 55692837 Lja6g2667 6 55687384 55692837 ECH