Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2661 ATGGCTAGCTACTCCCGCCCTCACATTTGCCAATGTCTGAGTCAACTACTAACTTTCCGGCGACATTTTCCGGTGACCATCGCCGGTCACCGCCGCAAGACCGGGCAACAATTGGTGGAGGAAGTTTCATCCCTTGCACAAGGCCTTCTCCAGCTAGGAGTCACACCTGGTGATGTAGTCGCCATCTCTGCTTTCAACAATGATTGGTATGTGGAGTGGTTATTAGCCATTGCATTTGTTGGAGGAATAGCTGCTCCTCTCAACTATCGCTGGAGTTTTGAGGAGGCAAGATTTGCAATGACTGCAGTGAAGCCAGTGCTGTTAGTCATTGATGAGAGTTCCTACTCATGGTACTTAAAACTCCACCAAAATGATATCCCATCTCTGAGGTGGCATGTTTTGTTGGATTCCCCTTCACCGGATTTTACAAACAAGTGGAATGGGTTAACTCCAGAAATGATTAAGAAGCATCATGTAAAGCCTCTAGAATTTGATTACTCCTGGGCACCTGAAGGCGCTGTTATAATATGCTTCACCTCAGGAACCACAGGAAAGCCCAAGGGAGTGACCATAAGCCATGGAGCTTTGATCATACAATCTCTAGCCAAGATTGCCATTGTTGGGTATAGTGAGGATGATGTCTATCTGCATACTGCTCCATTATGCCATATTGGTGGCTTGTCATCAGCCATGGCCATGCTTATGGCTGGAGGATGCCATGTATTGATGCCCAAGTTTGATGCTAAATCAGCAGTTGGTGCCATAGAGCAATATAAAGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGATGTCAACATTAAGGCTCAAAGAAACATGGAAAGGGGGAGATACTGTGAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTAATCAAAGACAGTAGCATATTCTTCCATAAAGCTAAGCTCGTTTCAGCTTATGGGATGACAGAGGCATGTTCTTCATTGACATTCTTGACACTGCATGATCCAATTCACAAACCCACAAGCCAGGCCCTTCAAACATTTGGTGAGACGGGATCCGATGTCATTCACCAGCCACAAGGGGTTTGTGTTGGCAAGGCTGCACCCCATGTAGAACTGAAAATATGTGCAGATTCCTCTGGTCACAGTGGAAAAATTTTAACTAGAGGACCACATTTAATGCTCAGGTATTGGGAACAAATCCTCACAACCCCATTGAACCAGAGGAATGAAGTCTGGCTTGACACAGGTGACATTGGATCAATTGATTGTTTTGGCAATTTGTGGCTCCTTGGACGAACAAATGGCCGTATCAAAAGTGGTGGGGAGAACATTTACCCTGAAGAGGTTGAGGCCATTCTACTAGAACATCCAGGCATTGCTAGTGTTGTTATTGTCGGAATCCCAGATGCTTATCTGACAGAAATGGTAGCAGCTTGTATACAACTGAGAGAAAATTGGCAATGGATCGAGCACTCTAATTCAATTGAAGAGTTTCATCTAACTAGCTTGAATCTCCAGCAACACTGTATGGAAAATAATTTAAGCAGGTTCAAGATACCGAGGATGTTTATTGAATGGACGAAGCCTTTTCCACTTACTACCACGGGAAAAATAAGAAGAGACCAATTACAAAAGGAAGTTTTGTCTCAGCTACAATCTTTGCACAGTAACCTTTGA 1683 0.4409 MASYSRPHICQCLSQLLTFRRHFPVTIAGHRRKTGQQLVEEVSSLAQGLLQLGVTPGDVVAISAFNNDWYVEWLLAIAFVGGIAAPLNYRWSFEEARFAMTAVKPVLLVIDESSYSWYLKLHQNDIPSLRWHVLLDSPSPDFTNKWNGLTPEMIKKHHVKPLEFDYSWAPEGAVIICFTSGTTGKPKGVTISHGALIIQSLAKIAIVGYSEDDVYLHTAPLCHIGGLSSAMAMLMAGGCHVLMPKFDAKSAVGAIEQYKVTSFITVPAIMASLMSTLRLKETWKGGDTVKKILNGGGSLSLELIKDSSIFFHKAKLVSAYGMTEACSSLTFLTLHDPIHKPTSQALQTFGETGSDVIHQPQGVCVGKAAPHVELKICADSSGHSGKILTRGPHLMLRYWEQILTTPLNQRNEVWLDTGDIGSIDCFGNLWLLGRTNGRIKSGGENIYPEEVEAILLEHPGIASVVIVGIPDAYLTEMVAACIQLRENWQWIEHSNSIEEFHLTSLNLQQHCMENNLSRFKIPRMFIEWTKPFPLTTTGKIRRDQLQKEVLSQLQSLHSNL* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2661 560 Pfam AMP-binding enzyme 26 441 IPR000873 -
Lja6g2661 560 CDD AFD_class_I 176 541 - -
Lja6g2661 560 PANTHER ACYL-COA SYNTHETASE FAMILY MEMBER 2, MITOCHONDRIAL 6 551 - -
Lja6g2661 560 Pfam AMP-binding enzyme C-terminal domain 450 539 IPR025110 -
Lja6g2661 560 Gene3D - 437 552 IPR045851 -
Lja6g2661 560 SUPERFAMILY Acetyl-CoA synthetase-like 8 554 - -
Lja6g2661 560 Gene3D - 3 431 IPR042099 -
Lja6g2661 560 ProSitePatterns Putative AMP-binding domain signature. 176 187 IPR020845 -
Lja6g2661 560 PANTHER ACYL-COA SYNTHETASE 6 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2661 Lja-Chr6 55616959 55622084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2661 45 468 Monolignol Biosynthesis Gene Families AT3G21240 30.330 2.80e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2661 K14760 - gmx:100809925 929.858