Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2659 ATGGCGGACAAAGCAGTCACCATCCGAACCCGCAAGTTCATGACCAACCGACTCCTCTCCAGGAAGCAATTCATTGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCAAAGGCTGAGCTTAAGGAGAAGCTGGCAAGGCTGTATGATGTGAAGGACCCTAACACTGTGTTTGTCTTCAAATTCCGGACACATTTTGGAGGTGGCAAATCCACTGGCTTTGGGTTGATCTATGATTCGCTTGAAAATGCTAAGAAGTATGAGCCCAAGTACAGGCTTATCAGGAATGGTCTTGACACTAAAGTTGAAAAGTCAAGGAAGCAACTGAAGGAGAGAAAGAACAGAGCTAAGAAAATCCGAGGAGTGAAGAAGACAAAGGCTTCTGATGCTGCCAAGGGTGGAAAAAAGAAATGA 414 0.4517 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAAKGGKKK* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2659 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lja6g2659 137 Pfam Ribosomal protein S24e 26 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Lja6g2659 137 MobiDBLite consensus disorder prediction 103 137 - -
Lja6g2659 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Lja6g2659 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Lja6g2659 137 Gene3D - 1 132 - -
Lja6g2659 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Lja6g2659 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2659 Lja-Chr6 55605232 55607475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2659 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 84.848 1.72e-83 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2659 K02974 - gmx:100499852 239.58