Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2654 ATGGCTACTTCAGAGGATGATGGGGGTGAACCAAAATTTCCTGAGCCACTTTTCGTAGAAGATGAAGAGGAAGAGCACGAGGATGACGAAGAGGTAGTGGAAGACAATGATTTGGGATGCAGTGGTGACGATACGGATTCAGATAGTTCAGATGATGAATTCAGGAATGTGCTTACCTTAACAGCTGATGAGATACGAGCTTTAACGTTTTGCAGTGAGTCTAATGCATACACATTTTACTGTGCCTACGCGAAGGGAAAGGGATTTGTGGTTAGAAAAGATGCGTGTGAACGAGATTCTAATAACAAAGTTGTAATGCGAAAATTTGTATGCAATAGGGAGGGGTTAAGGGAACCAAAGTACTTCATTATGGATAGGCAAAGAGCCCACAGAAGCCTAACCCGCACTAACTGTCAAGCAAGACTCAGGATACGGTACGATAACAAGAAATGCCAATGGGGTGTGGTGGGGTTTGAGGAGAAACACAACCACGAACTTACCCCGTCGGTATATGTCCCTGTGATTAATGCTTACCGTACAATTAGTGAAGGAGACAAAGCTCAGGCAGAAAGTCTTCACGCATATGGTGTCAGAACCTGTCATATCATGGGTTATTTGACGGCACAGAAGGGGGGATATTCTAAAGTAGGATTCTTGAAAGAAGATCTGTACAACTACTTCAGTCGCCAGAGACATAACAGAGTCAAAGGTGGGGATGCTCGAGCTGCTCTAACTTACCTAACATCAAAGGCTGATGTAGATCCCATGTTCTATTCGAAATACACCACCTCAGGAGACAATAGATTGAATAATCTTTTTTGGGCAGATGGTGTTAGCAGGACAGATTACCAATGCTTCCGGGATGTTCTTGCCTTTGACTCCACTTACGGCTCCACTAAGTATAAACATCCACTGGTTATATTTTGTGGAACTAACCATCATGACCAAACGGTTATATTTGGATGCGCTTTATTGATTGATGAGACTATTGAGACATACAAGTGGTTGTTGGAAACTTTTTTGGAAGCAATGAGTGGGAAACAACCTAAATCTGTTGTAACCGACGGAGATCTTTCTATGAGGGAGGCCATCAAACAAGTATTCCCGAACACATCGCATCGACTATGTGCATGGCACTTGCACAAGAACGCAAAGGATCACAGAATGAGCAAGGAATTTTTGGATGACTTTCAGAAAGCACTTTATTGGCACTTCAGTGTTGAGGAATTTGAGGAACACTGGCAGAACATGGTTTCTAAGCACGGCCTACAGAAAGACAAGTGGGTTTTAAGTGTGTATGAGAAAAAGGAATCGTGGTGCTCCGCATATCTCCGTGATCAGTTTTTTGCTGGGATACGGACAACATCAATATGTGAAGCCATAAATAGTCGTATCAAGATCTATGTCAAGAGAAGAATTAGTCTTATAGACTTCATGCAAACCATTGAGCATGCTTTAAGAGGTGAAGCTGCAAAACTGTACACGCGTGAAATTTTTAAAGAAGTAAGAAATCAAATTGAGCGTGTGGCTCCATTGAATTATAAAGATAAAACAACGGATGGAGATGAAGTGAGGTACGAGATGTTCCATTATAGGAGGCCAGAAAGAACCATTGAAGTAGTCTACAACAAGAAAAGTAATCAATTTTACTGTCCATGTCGGCTATTTGAATCACGTGGAATACCATGTTCACATATTTTCAACAGCATGAAATATGAGCTCATGGAAACCATTCCTAAAACACTTATGCTTAGCAGGTGGGGACGGTATGCAAAATCTGAATACTTGTCGGCAACATCCACCGATGAGGTGGACAGTTCTGTAATGAAGACAACACGATTTGGGGCTATATCTGCTGCGTGCAACGGGCTCTCCGTCTTAGGTTCTGACAATCCTGGGCTCTTCACTGACATGATGAATGATATTTTGAGGTTGACGACGAAGTATAAGAATAAGATACTCAAACAAGGCGGACATGTCAACGGGACCAACGACATTCGTGATCCCAATATCGTCAAATCTAAAGGACGCCAACCTGCAACCCCGAAACCAAAGAAGAATAAAAAGAATAAGAAACAAGCAAGGTGTTCAAACTGTCATAAGCTTGGTCACAACGCAAGGACTTGTTCTACCCTCGTTGGTGGAGAAGATAATGATTTGGAGGGTGATGAGCGATCCACGCAGGAGGATGAGGGCAACGTAAATGACGATAGCACGGGCCAGCCAACCGAGGCCACGACGCAGCCAAGTAGATCCAATTCTAATGTTGGTCGTCGAGGACATAAAGCCAAGAAACAAAAGACAAAGAACTCGAATCTCTGTTCAGTTAATGAAAAGGAAAACCTAACCCCCGCAACTGATAAAGATGAAAGTCAGATGGGCTCACGTGCTTTATCCCCACAAAATTCAACAATGCAACCGCCAACCCAGACAGCTGCTTCTTGTGGTATAGCTCATCCCGGATTTCATTACGCTGTCCCTCAATACGGAACACGGCCACCTAACTTAGCCGTTGGTACGGGTATGCCAGCCCAGGTCAACTTCCCACATGGTTATGGTGGATGGATACCAGACCCCAACATTCAATATGCTTATGGTCAACCCATAAATGGTCCTCAAAATGCTCCTCAATGCTATGGTTATGTTCCGATATTGCCCCGAAACTATCAGAATCTATCTGCTTGTCAACCTATTCATGCTCCTGCTGTTAGAGGACATAGCCAACACCAAGGCCCCCGTAGCCAAATGCAACATGATGCGGCGAAGAAAAAGGCTGGTACATAA 2784 0.435 MATSEDDGGEPKFPEPLFVEDEEEEHEDDEEVVEDNDLGCSGDDTDSDSSDDEFRNVLTLTADEIRALTFCSESNAYTFYCAYAKGKGFVVRKDACERDSNNKVVMRKFVCNREGLREPKYFIMDRQRAHRSLTRTNCQARLRIRYDNKKCQWGVVGFEEKHNHELTPSVYVPVINAYRTISEGDKAQAESLHAYGVRTCHIMGYLTAQKGGYSKVGFLKEDLYNYFSRQRHNRVKGGDARAALTYLTSKADVDPMFYSKYTTSGDNRLNNLFWADGVSRTDYQCFRDVLAFDSTYGSTKYKHPLVIFCGTNHHDQTVIFGCALLIDETIETYKWLLETFLEAMSGKQPKSVVTDGDLSMREAIKQVFPNTSHRLCAWHLHKNAKDHRMSKEFLDDFQKALYWHFSVEEFEEHWQNMVSKHGLQKDKWVLSVYEKKESWCSAYLRDQFFAGIRTTSICEAINSRIKIYVKRRISLIDFMQTIEHALRGEAAKLYTREIFKEVRNQIERVAPLNYKDKTTDGDEVRYEMFHYRRPERTIEVVYNKKSNQFYCPCRLFESRGIPCSHIFNSMKYELMETIPKTLMLSRWGRYAKSEYLSATSTDEVDSSVMKTTRFGAISAACNGLSVLGSDNPGLFTDMMNDILRLTTKYKNKILKQGGHVNGTNDIRDPNIVKSKGRQPATPKPKKNKKNKKQARCSNCHKLGHNARTCSTLVGGEDNDLEGDERSTQEDEGNVNDDSTGQPTEATTQPSRSNSNVGRRGHKAKKQKTKNSNLCSVNEKENLTPATDKDESQMGSRALSPQNSTMQPPTQTAASCGIAHPGFHYAVPQYGTRPPNLAVGTGMPAQVNFPHGYGGWIPDPNIQYAYGQPINGPQNAPQCYGYVPILPRNYQNLSACQPIHAPAVRGHSQHQGPRSQMQHDAAKKKAGT* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2654 927 PANTHER OS02G0262500 PROTEIN 65 481 - -
Lja6g2654 927 MobiDBLite consensus disorder prediction 1 52 - -
Lja6g2654 927 MobiDBLite consensus disorder prediction 902 927 - -
Lja6g2654 927 MobiDBLite consensus disorder prediction 656 812 - -
Lja6g2654 927 MobiDBLite consensus disorder prediction 733 756 - -
Lja6g2654 927 SUPERFAMILY Retrovirus zinc finger-like domains 679 714 IPR036875 GO:0003676|GO:0008270
Lja6g2654 927 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 65 481 IPR031052 GO:0006355
Lja6g2654 927 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Lja6g2654 927 ProSiteProfiles Zinc finger SWIM-type profile. 536 574 IPR007527 GO:0008270
Lja6g2654 927 MobiDBLite consensus disorder prediction 679 698 - -
Lja6g2654 927 Pfam MULE transposase domain 289 383 IPR018289 -
Lja6g2654 927 PANTHER OS02G0262500 PROTEIN 487 695 - -
Lja6g2654 927 MobiDBLite consensus disorder prediction 769 812 - -
Lja6g2654 927 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 487 695 IPR031052 GO:0006355
Lja6g2654 927 MobiDBLite consensus disorder prediction 17 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2654 Lja-Chr6 55554028 55557287 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g2654 MULE 5.4e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2654 - - ccaj:109792835 706.827