Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2652 ATGTCAATGAATAAATATAGACCGGAACTTGGAAGGCCTGCCTCAGGTAGAAGAAGATTAAAAGATTTATTACTTCAGAGCGATAATCGTTGTTGTGCTGATTGTAACGCTCCAGATCCTAAATGGGCGTCTGCCAATATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGAACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGACTGGTCAGAGGATGAAGTAGAAGCAATGATTGAAGTTGGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTACTTTCCTGAAGGCTATACAAAACCCGGACCAGATGCTAGTCATGAGCAGCGTGCAAAGTTTATACGGTCAAAGTATGAGCTTCAAGAATTCTTGAAACCTAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTAGGATCAAGTTCTGCCAAAAGTTTTATGGATAGTTTCAAAAGTAGTAGTACACAGAGACTGGAAGGCATGGTAGAATTTATTGGATTGTTGAAGGTGAAAGTGATAAAAGGCACAAATTTAGCTATCAGAGATATAAAGACAAGCGACCCGTATGTTGTTTTGAGCCTTGGCCAACAGACTGTCCAGACAGCAGTAGTGAAGAGCAACTTGAATCCAGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGGAGTATGGACAACTGAAATTGAAAGTATATGATCACGACACATTTTCTGCTGATGATATAATGGGAGAAGCGGACATTGATCTTCAGTCGCTGATAACATCTGCTATGGCGTTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTGAAATCGGATGACAATGCACTGATTGAGGATAGTACAGTCAATATTGATGATGGTAAGGTTAAACAAAATATGACACTCAAGCTCCAGAATGTTGAATCTGGAGAAATAGATTTAGAGCTCGAGTGGATTCCTCTTGATCAATAG 990 0.4 MSMNKYRPELGRPASGRRRLKDLLLQSDNRCCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSEDEVEAMIEVGGNASANSIYEAYFPEGYTKPGPDASHEQRAKFIRSKYELQEFLKPSLRIVSGKSSLGSSSAKSFMDSFKSSSTQRLEGMVEFIGLLKVKVIKGTNLAIRDIKTSDPYVVLSLGQQTVQTAVVKSNLNPVWNEEHMLSVPEEYGQLKLKVYDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSTVNIDDGKVKQNMTLKLQNVESGEIDLELEWIPLDQ* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2652 329 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Lja6g2652 329 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Lja6g2652 329 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Lja6g2652 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 329 - -
Lja6g2652 329 CDD ArfGap 20 126 - -
Lja6g2652 329 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Lja6g2652 329 SMART C2_3c 174 269 IPR000008 -
Lja6g2652 329 Pfam C2 domain 173 263 IPR000008 -
Lja6g2652 329 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Lja6g2652 329 ProSiteProfiles C2 domain profile. 155 270 IPR000008 -
Lja6g2652 329 SUPERFAMILY ArfGap/RecO-like zinc finger 17 134 IPR037278 -
Lja6g2652 329 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Lja6g2652 329 CDD C2_ArfGAP 172 316 - -
Lja6g2652 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 329 IPR044518 GO:0005096|GO:0005543
Lja6g2652 329 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 327 IPR035892 -
Lja6g2652 329 Gene3D Arf GTPase activating protein 7 137 IPR038508 -
Lja6g2652 329 Gene3D C2 domain 171 329 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2652 Lja-Chr6 55503703 55508710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2652 10 329 C2H2 Transcription Factor Family AT4G21160 73.636 0.0 514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2652 6 55503703 55508710 Lja6g2652 6 55503703 55508710 ECH