Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2649 ATGGCTCTTTCTATGCACAAGGACTCTTCCAACAGCATGGATTCAAGCAAGTATGTGAGGTACACTCCTGAACAAGTTGAAGCTTTGGAGAGGGTCTATGCTGAATGTCCAAAGCCGAGTTCTTTAAGGAGGCAACAACTTATCAGAGAGTGTCCTATCCTCTCCAACATTGAACCAAAACAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAGAAGCAGAGGAAGGAAGCTTCACGTTTGACCACAGTGAATAGGAAGCTGAGTGCTATGAACAAGCTGCTAATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCACATCTGGTGTATGAAAATGGTTACATGAAGCAACAGATACATACTGCATCTGCTGCGACCACCACAGATAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAAAATCAACAGCAAAACCCATCTCAGCATTCCCAAAGGGATGCCAACAACCCAGCTGGTCTTCTCGCTATTGCTGAGGAGACCCTGGCAGAGTTCCTATCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGTAGTGGGATAGCGGCACGAGCCTGCGGCCTTGTGAGCCTAGAGCCCACTAAGGTTGCCGAGATTCTTAAAGATAGAATGTCTTGGTATCGTGACTGTCGATGCCTTGATGTGCTGAGTATAGTCCCTACTGGGAGTGGGGGAACAATAGAGCTCATGTACATGCAGACTTATGCGCCTACAACATTGGCAGCAGCTCGTGACTTTTGGACATTGAGATATACTACAACTTTAGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGACCAATTCAACTGGTGGTCCCACTGGGCCTCCTCCTTCAAACTTTACTAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTCGACCTTGTGAGGGTGGTGGCTCCATTATTCACATTGTTGATCACATAGACCTAGATGTCTGGAGTGTTCCTGAAGTGCTGAGGCCCCTCTATGAATCATCCAAAATCCTAGCTCAGAAAATGACGATTGCTGCCCTGCAACACATAAGACAGATAGCACAGGAGTCCAGTGGAGAAATTCAGTATGGTGGGGGACGCCAACCAGCTGTCTTAAGGACGTTTAGTCAGAGACTTTGCAGGGGGTTCAATGATGCTGTGAATGGATTTGTGGATGACGGTTGGTCAATGCTGGGTCATGATGGGGCGGAAGATGTGACTATAACTGTAAACTCCACCCCCAACAAGTTTTTGGGGTCCAATTACAATTCGTCAATGTTCCCAGCATTTGGAGGCGGGGTCCTGTGTGCTAAAGCATCAATGCTACTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTCCTGAGGGAGCATAGATCAGAGTGGGCTGATTATGGGGTTGATGCGTACTCTGCCGCTTGTCTTAAGGCTAGTCCCTATGCAGTTCCTTGTGCAAGACCTGGTGGTTTCCCCAGCACTCAGGTTATTTTACCACTTGCTCATACCATTGAGCATGAGGAGTTCCTGGAGGTAGTTCGAATAGAGGGTCATGCATTCTCCCCTGAAGACGTGGCATTAGCACGTGATATGTATCTATTGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGGGCATGTGCTCAGCTGGTGTTTGCACCAATTGATGAATCATTTGCTGATGATGCTCTCTTACTGCCTTCAGGCTTTCGTGTCATCCCATTGGATCCTAAAACAGATGGATCAGCTGCGTCTAGGACATTGGATTTGGCATCGACACTTGAAGTAGGTTCTGGTAGTACTCGTCCAGCTGGTGAAGCTGATGGTTACAACCTTAGGTCGGTCCTCACAATTGCATTTCAATTTACCTTCGAGAACCATTTAAGGGACAATGTTGCTGCTATGGCCCGTCAGTATGTGCGTAGTGTTGTGGGATCAGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCTCGACTCAGCACCCAGATGGGCCCGAAACCACTTCCTGGTTCACCAGAGGCTGTTACCTTGGTTCGTTGGATCTGTAGAAGTTACAGGATTCACACTGGTGCAGATCTTTTTAGAGTTGAGTCTACAGCTGGTGATGCTATCTTGAAGCAACTTTGGCAACATTCTGATGCAATCTTGTGCTGTTCTGTGAAAACAAATGCAGCTCCGGTGTTCACCTTTGCAAATCAGGCTGGACTAGACATGCTTGAAACTACTCTGGTTGCCCTTCAAGATATCATGCTTGATAAAGTTCTTGATGAAGGTGGCAGGAAGATTCTTTGCTCTGAATTCTCCAAGATAATGACACAGGGTTTTGCATCTCTTCCGGCAGGGATATGTGTATCCAGTATGAATCGACCAGTCTCCTATGATCAGGCCATTGCATGGAAAGTTCTCAATGATGATGATTCCAATCACTGCCTGGCCTTCATGTTTGTGAACTGGTCTTTTGTCTGA 2529 0.469 MALSMHKDSSNSMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLTTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASAATTTDNSCESVVVSGQNQQQNPSQHSQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRMSWYRDCRCLDVLSIVPTGSGGTIELMYMQTYAPTTLAAARDFWTLRYTTTLEDGSLVICERSLTNSTGGPTGPPPSNFTRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSMLGHDGAEDVTITVNSTPNKFLGSNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSTQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTDGSAASRTLDLASTLEVGSGSTRPAGEADGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQMGPKPLPGSPEAVTLVRWICRSYRIHTGADLFRVESTAGDAILKQLWQHSDAILCCSVKTNAAPVFTFANQAGLDMLETTLVALQDIMLDKVLDEGGRKILCSEFSKIMTQGFASLPAGICVSSMNRPVSYDQAIAWKVLNDDDSNHCLAFMFVNWSFV* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2649 842 Pfam MEKHLA domain 697 841 IPR013978 -
Lja6g2649 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 842 - -
Lja6g2649 842 Pfam START domain 165 372 IPR002913 GO:0008289
Lja6g2649 842 MobiDBLite consensus disorder prediction 135 156 - -
Lja6g2649 842 CDD START_ArGLABRA2_like 159 375 - -
Lja6g2649 842 SUPERFAMILY Bet v1-like 165 376 - -
Lja6g2649 842 Gene3D - 199 382 IPR023393 -
Lja6g2649 842 SMART HOX_1 14 80 IPR001356 GO:0003677
Lja6g2649 842 SMART START_1 164 374 IPR002913 GO:0008289
Lja6g2649 842 CDD bZIP 69 108 - -
Lja6g2649 842 CDD homeodomain 17 77 IPR001356 GO:0003677
Lja6g2649 842 Coils Coil 86 106 - -
Lja6g2649 842 Gene3D - 8 82 - -
Lja6g2649 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 842 IPR044830 GO:0003700
Lja6g2649 842 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Lja6g2649 842 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Lja6g2649 842 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Lja6g2649 842 ProSiteProfiles START domain profile. 155 356 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2649 Lja-Chr6 55464861 55470423 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2649 1 842 Homeobox Transcription Factor Family AT2G34710 79.415 0.0 1398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja6g2649 START 1.3e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2649 K09338 - gmx:100779499 1547.33