Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2632 ATGGACGACACCGAGGGAGTTCTCAGTTTCGATTTCGAAGGCGGTCTCGACGCCGCCACCACCGCCGTTGCCGCCGCAGCACCTTCCGGACCCCTCGTCCACCATGATCCCACGTCCGCCTCTTCTGCCTTCGCCAACGGTGGTGCCGTCTCCGCCCCATCTGCTGCCGACCCCGCGCCCGTCAACAACGTCACCGTCGGGCGCCGGAGCTACCGGCAGACGGTGTGCCGCCACTGGCTTCGGAGCTTGTGCATGAAGGGCGACGCGTGTGGGTTCCTGCATCAGTATGACAAGTCCAGGATGCCGGTGTGTCGATTCTTCAGGCTCTATGGAGAGTGCCGCGAGCAGGATTGTGTGTATAAGCACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGCCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAGTCTCCTGGACCTCCTCCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATCTTACAATTACAACTCCTCTAACAAATTTTTCCATCAAAGGGGCACTGGCTATAATCAACAAGTTGAAAAACCTCAGTTTCCTCAAGGAATTAATTCTACAAACCAAGTTGTAGCTGGAAAACCATTAGGAGCAGAGTCAGGAAATGTCCAGCAGCAGCAACAAGTTCAGCAGTCTCAGCAGCAGATCAGCCAGAGCCAAACACAAAATCTTGCAAATGGCCAGCCCATTCAAGCCAATAGAACTGCAACTCCTTTACCCCAAGGAGTATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCTAAACTAAATGAAGCTTTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGGATTGGTGGTTCTGTTAGTGGCGGGAACTGGAAATATGCTCACGGAACTGCACATTACGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACACGCCATTTAAGGAACCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATTGGTGAGCAGCTGGCATCCTTGCTTTATCTTGAGCCGGATAGTGAGCTTATGGCTATCTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAAAAAGCAAAGGGAGTGAATCCCGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTGAGGACAACGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAAGAGAGCTTTGGTCACGGTGTTGGACCAGCTATCCAAGGCAGAGGTAGGGGCCGAGGTATGATGTGGCCGCCTCACATGCCTCTGGGTCGTGGAGCCAGACCCATGCCTGGAATGCAAGGTTTTAACCCAATGATGGGTGATGGATTATCCTATGGGCCTGTTGGACCTGATGGTTTTGGTATGCCAGATCTTTTTGGTGTGGGACCCCGAGGTTTTGGCCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGGTCCCCCAGCAGCTATGATGTTTCGTGGACGACCCTCACAACCTGGGATGTTCCCGGGTGGTGGATTTGGGATGATGATGAATCACGGGCGTGGTCCATTTATGGGGGGGATGGGAGTTGCAGGTGCAAATCCTCCAAGAGGTGGTAGGCCAGTTAATATGCCTCCGATGTTCCCGCCACCTCCGCCCCCACCTCAGAATACAAACCGCATCGCCAGGAGAGATCAAAGAACCGGTGATCGGAATGATAGATACGGTCCGGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAGAGTGGTGGTCCTGATGATGACATGCAGTATCAGCAAGGGCACAGGGCACAGCTCCAAGATGATCAGCATCCTGCCTCGAACAACTTCAGGAATGATGATAGTGAAAGTGAGGATGAGGCGCCTAGGCGGTCAAGACACGGAGAGGGGAAAAAAAGAAAAGGCGAAGCTTAG 2073 0.4988 MDDTEGVLSFDFEGGLDAATTAVAAAAPSGPLVHHDPTSASSAFANGGAVSAPSAADPAPVNNVTVGRRSYRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLSYNYNSSNKFFHQRGTGYNQQVEKPQFPQGINSTNQVVAGKPLGAESGNVQQQQQVQQSQQQISQSQTQNLANGQPIQANRTATPLPQGVSRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVSGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAIQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPMMGDGLSYGPVGPDGFGMPDLFGVGPRGFGPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNHGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPPPQNTNRIARRDQRTGDRNDRYGPGSEQGKSQDMLSQSGGPDDDMQYQQGHRAQLQDDQHPASNNFRNDDSESEDEAPRRSRHGEGKKRKGEA* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2632 690 SMART c3hfinal6 126 150 IPR000571 GO:0046872
Lja6g2632 690 SMART c3hfinal6 70 96 IPR000571 GO:0046872
Lja6g2632 690 SMART c3hfinal6 98 124 IPR000571 GO:0046872
Lja6g2632 690 MobiDBLite consensus disorder prediction 433 451 - -
Lja6g2632 690 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Lja6g2632 690 MobiDBLite consensus disorder prediction 207 241 - -
Lja6g2632 690 MobiDBLite consensus disorder prediction 622 659 - -
Lja6g2632 690 ProSiteProfiles Zinc finger C3H1-type profile. 70 97 IPR000571 GO:0046872
Lja6g2632 690 Gene3D - 62 127 - -
Lja6g2632 690 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 687 - -
Lja6g2632 690 MobiDBLite consensus disorder prediction 660 690 - -
Lja6g2632 690 ProSiteProfiles YTH domain profile. 259 394 IPR007275 GO:0003723
Lja6g2632 690 Pfam YT521-B-like domain 259 393 IPR007275 GO:0003723
Lja6g2632 690 Coils Coil 217 237 - -
Lja6g2632 690 MobiDBLite consensus disorder prediction 411 469 - -
Lja6g2632 690 Gene3D ph1033 like domains 237 397 - -
Lja6g2632 690 MobiDBLite consensus disorder prediction 572 690 - -
Lja6g2632 690 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 687 IPR045168 -
Lja6g2632 690 MobiDBLite consensus disorder prediction 583 602 - -
Lja6g2632 690 SUPERFAMILY CCCH zinc finger 69 100 IPR036855 GO:0046872
Lja6g2632 690 MobiDBLite consensus disorder prediction 607 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2632 Lja-Chr6 55086878 55099069 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja6g2632 YTH 1.1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2632 K14404 - gmx:100802826 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2632 6 55086878 55099069 Lja6g2632 6 55086878 55099069 ECH