Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2626 ATGAAGGAAGGGAGTGGTAGGAAGCAGGGTGCAGCCCCACCCTGTGCAGCATGTAAGCTTCTGAGGAGAAGATGTGCTCAGGATTGTGTTTTTGCTCCCTATTTTCCTGCTGATGAGCCTCAGAAGTTTGCAAATGTGCACAGGGTCTTTGGTGCCAGCAATGTCAACAAAATGCTTCAGGACCTACCAATGCATCAAAGAGGTGATGCAGTGAGTAGCATGGTGTATGAGGCCAATGCTAGGGTCCGAGATCCTGTTTATGGGTGCGTAGGGGCTATTTCTTCTCTTCAGCAACAGATTGATGTTCTACAAACCCAATTAGCTCTGGCCCAAGCTGAGGTGGTGCACCTTCGGGCCCACCAAAATAGGTGCTTTTCCAATCTTGGGCTTGGATCCACTAGCCCAACAAATAGTGGGTCCCCTTCATCCAAGGTCATGGACCCACATGCTAAGCCTATTTTTGACATGGACATGGGGGTGGATCAAGAGAGCTATGGTGGTTCAATGTGGTAA 513 0.4932 MKEGSGRKQGAAPPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHRVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRAHQNRCFSNLGLGSTSPTNSGSPSSKVMDPHAKPIFDMDMGVDQESYGGSMW* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2626 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 156 - -
Lja6g2626 170 Coils Coil 93 113 - -
Lja6g2626 170 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Lja6g2626 170 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Lja6g2626 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2626 Lja-Chr6 55037641 55039906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2626 1 170 AS2 family AT1G31320 79.070 5.67e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja6g2626 LOB 1.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2626 - - gmx:100794219 301.212