Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2615 ATGGCTCTTTCGGCCGAACCCTCGTCGTCGTTGAGCTTCACGTCATCTTCCCATTTATCAAATGGCTCTGTTAGCCACAATATGGGAACTACTAATGGCTCTGATCCTGGACCTAACCTTGATGTTATCAGTTTGAGTAAGCTTAGCTCTAACTTGGAGCAGCTTTTGATAGATTCTGATTCTGATTATAGCGATGCTGAAATTATTGTGGAGGGGGTCGCGGTTAGGATTCATCGATGTATTCTGGCTTCTAGGAGTAAGTTTTTCCATGAACTATTCAAGAGAGACAAAGGGTCATCAGAGAGCGGAGGGAAATCGAAGTATTGCATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATATTCCTGGGCTATGTATATACTGGTAAACTTAAACCCTCTCCAATGGAGGTGTCTACTTGTGTTGACAATGTGTGTGCCCATGATGCTTGTGGGCCTGCAATAAACTTTGCTCTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAATTGGTATCACTTTTCCAGCGACGTCTTCTTAACTTTGTAGGAAAGGCGCTTGTAGAAGATGTCATCCCAATCCTCACACTTGCTTTCCAATGTCAATTGAGTCAACTTGTCATTCAATGTGTTGACAGGGTGGCACGATCAGACCTAGACCAGATCTCAATCGAGAAAGAGCTTCCCCTTGAGCTCTCAGAAAAAGTTAAATTGCTGCGCCGCAATCCTCAGCAAGATGCTGAAAATACTGTAAATGATGCTTCTGAAGTGGAAGCTTTGTCTCTGAAGCGGATCACTAGAATTCACAAGGCATTGGGGTCGGATGATGTAGAGCTTGTTAGACTTCTTTTGGACGAGTCAGACATTACTTTAGATGAAGCAAATGCTCTCCATTATGCTGCAGCGTACTGTGACCCCAAGGTTGTTTCTGAGGTACTTGGTTTAGGTCTGGCTAATGTTAATCTTCGGAATTCTCAGGGTTACACAGTGCTTCACATTGCTGCCAAGCGCAGAGAACCTTCCATTATAGTATCTCTTCTTACAAAAGGGGCTTGTGCATCAGATTTAACTTTTGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACTAGGCCAAAGGATTACCATGCAAAAACAGAACAGGGGAAAGAAACAAACAAAGATCGGATATGCATTGATGTTCTTGAAAGAGAAATGAGGCGGAATCCATTGGCTCGGGATACTGCTATCTCTTCACAAACAATGGCTGATGATCTCCACATGAAGCTATTATATCTTGAGAACAGAGTGGCTTTTGCAAGACTATTCTTCCCTTCAGAAGCCAAACTAGCAATGGACATCGCACATGCTGAGACAACATCCGAGTTTGCCGGTCTTTCAAGATCAAAAGGTTCAAATGGAAACTTAAGAGAGGTTGATCTCAATGAGACTCCCATAATGCAGAACAAAAGACTTCTTTCTAGGATGGAAGCCCTTATGAAAACAGTGGAGATGGGGCGGCGGTACTTTCCTCATTGCTCAGAAGTGCTAGATAAGTTCATGGAGGATGATTTGCCAGACTTATTCTACCTTGAAAAGGGTACCCAAGAAGAGCAGAGAATAAAGAGGAAGCGTTTCATGGAGCTTAAAGATGATGTCAACAAGGCTTTCAACAAGGACAAGGCTGTGTTTAGCCGCTCTGGGATTTCATCTTCATCTTCCTCATCATCCCTCAGAGATTCTATATTACAAGGCCAGAAAAGTGTGAAAAAGCTTTAG 1782 0.4299 MALSAEPSSSLSFTSSSHLSNGSVSHNMGTTNGSDPGPNLDVISLSKLSSNLEQLLIDSDSDYSDAEIIVEGVAVRIHRCILASRSKFFHELFKRDKGSSESGGKSKYCMSDLLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSTCVDNVCAHDACGPAINFALELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVIPILTLAFQCQLSQLVIQCVDRVARSDLDQISIEKELPLELSEKVKLLRRNPQQDAENTVNDASEVEALSLKRITRIHKALGSDDVELVRLLLDESDITLDEANALHYAAAYCDPKVVSEVLGLGLANVNLRNSQGYTVLHIAAKRREPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPLARDTAISSQTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSRSKGSNGNLREVDLNETPIMQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRKRFMELKDDVNKAFNKDKAVFSRSGISSSSSSSSLRDSILQGQKSVKKL* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2615 593 PANTHER REGULATORY PROTEIN NPR3 10 578 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lja6g2615 593 PANTHER REGULATORY PROTEIN NPR3 10 578 - -
Lja6g2615 593 ProSiteProfiles Ankyrin repeat region circular profile. 333 358 - -
Lja6g2615 593 MobiDBLite consensus disorder prediction 566 593 - -
Lja6g2615 593 Pfam NPR1/NIM1 like defence protein C terminal 375 577 IPR021094 -
Lja6g2615 593 Pfam Ankyrin repeats (3 copies) 276 358 IPR002110 GO:0005515
Lja6g2615 593 Pfam BTB/POZ domain 61 148 IPR000210 GO:0005515
Lja6g2615 593 Gene3D - 267 407 IPR036770 -
Lja6g2615 593 SUPERFAMILY Ankyrin repeat 262 376 IPR036770 -
Lja6g2615 593 CDD BTB_POZ_NPR_plant 47 190 - -
Lja6g2615 593 MobiDBLite consensus disorder prediction 566 585 - -
Lja6g2615 593 SUPERFAMILY POZ domain 50 188 IPR011333 -
Lja6g2615 593 SMART BTB_4 64 190 IPR000210 GO:0005515
Lja6g2615 593 ProSiteProfiles Ankyrin repeat profile. 333 358 IPR002110 GO:0005515
Lja6g2615 593 SMART ANK_2a 270 298 IPR002110 GO:0005515
Lja6g2615 593 SMART ANK_2a 299 329 IPR002110 GO:0005515
Lja6g2615 593 SMART ANK_2a 333 365 IPR002110 GO:0005515
Lja6g2615 593 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Lja6g2615 593 Gene3D Potassium Channel Kv1.1; Chain A 41 222 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2615 Lja-Chr6 54915832 54920793 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja6g2615 NPR1_like_C 2.8e-96 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2615 K14508 - gmx:100217338 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2615 6 54915832 54920793 Lja6g2615 6 54915832 54920793 ECH