Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2613 ATGGAAACCGGTGATGGCGGAAAACGAACTCAGCCACCGCCGGAGGAGGTTACTCTGCAACCTGAATGGCGGCGCCGGAGCGGAAAACCGGAGAACATCGTTCTCCAACCCGAATGGAGACGGCCGAGGCCAAGTCCTGAACCGCGGCAACAAGAGCAACAACCAGAACCAGAATGGAGGCGCTCAACTCCAACCCCAACCACCACTGTTTGGGAACCTGAATGGAGGCGATCAAGAAGGTCGAGTTCCAACCAGAAACCGTTAGGGTCAAGTTCCGGTGGCGGCGTTGAAAGAGTCAGAGACCTCAACGACTCGTGGCGTCGTGCTCCTGCTTCTGCTTCTGCTCCAGATTATGTAGTTCCCAAACTGGAAAGACTACAAATATCGAAAGAATTACCCGTGTCGTCTTGTTCCCTTGAAAGAAAGGATAAGGCTACACCTATTAAAAGACCTGATAGTGGCGGGACGTTAGCGGTTTTAACGACCAGGCTTCGGGTGAATCATTTCCCTGTTAAGTTCGATCCGGAGGGTGTAATATTGCATTATAATGTTGCGGTCCGACCGAAGTTTTCGTCGAAGGTTGGTAAGCCTCAGAAGTTGTCCAAGTCTGATCTGTCGATGGTTAGAGAGAAATTGTTCTCTGATGATCCCGAGAGGCTGCCATTGGATATGACTGCTTATGACGGTGCGAACACGATATTTAGTGCGGTACATTTACCGGAAGAGACGTTTACCGTGGAGATCACTGAAGGAGAGGATGAGAAGACTGTTTCGTATAGTGTTAGCATATCACTTGTTAACAAGCTCAGGCTTCGCAAGTTAATGGACTATCTTTGTGCGCACACCATCTCAATTCCTAGGGATATTTTACATGGGATGGATGTTGTGGTGAGAGAAAATCCAGCAAGGCGCACAATTTCTGTGGGACGACATTTCTATCCTTCAAATCCTCCTTTGGTAATGAAGGATCTTCACCATGGAAATATTGCTGTAGGGGGGTTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCTGTTTTGGCTTTCCGAAAACAGATGTCAGTCTTGGATTTCTTGCACGAGTGCATTGATAATTTTAAATTGGTTGAATTTTATCACTTCAGGAAATATGTTGAGGAGGCACTTATTGGATTAAAAGTTAATGTGACCCACCGCAAATCCAAACAGAAATATGTTATAGCAGGATTAACTCCTAAAGTTACAAGGTATGTCACTTTCCCCATTGACGATACCAAGGGCTGGAATCTCTCTAAGGATGTTAGTCTTCTTAGCTTTTTTAAAGACAAATATGGCAAGGACATTGTATACAAAGATATTCCTTGCTTGGATTTAGGGAAAGGCAATAAAAAGAACTATGTACCCATGGAATTTTGTGTTTTAGTTGATGGTCAAAGATGTACCAGAGAGCATTTGGGTGGTGTTGCTGCAAACACATTGAAAGCAATGTCATTGGCTCACCCAAATGAGAGGGAGAGTGCAATACAAAAGATGGTGCAGTCAAGTGATGGACCTTGCGGTGGTGATCTTATTCAAAATTTCGGAATGAGTGTCAACACAACTATGACAACCATTGTAGGCCGTGTAATTTGTCCCCCTGAATTGAAGTTAGGTGATCCAAATGGAAAAAATATCAAGATAACAGTGGACATGGAGAAGTGTCACTGGAACCTTGCTGGAAGATCAATGGTGGAAGGCAAAGCAATTGAGCGTTGGGGCATTCTTGACTTCACCAGTTATGGGCCTTATAAATACAAATTAAGAGCAAAGGAATTCATTCAAAAGCTTATTGGTAAATACAAAAAATTGGGTATAAACATGCAGGAGCCTATTTGGTATGAAGAATCTTCAACGACGATACTTGCAAGTTATGACTTGCTATCTGAGTTACTTGCAAAAATAAACAACATTTGTAAATATAACCAAGGTCGCCTACAATTTCTTCTTTGTGTAATGGCTAAAAAAAGTTCGGGATATAAGTACCTCAAGTGGATTTCTGAGACCAAAATTGGTATAGTGACACAATGCTGCTTGTCCAGTAGTGCTAATGAAGGCGAGGATAAATTTTATACTAATTTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTGGAGCTCAGTAATAGGCTCCCTTACTTTGAGGGTGAAGGTCATGTTATGTTTGTGGGGGCTGATGTCAATCATCCCGGTTCTCGGGACACGAGGAGTCCATCAATTGCTGCTGTGGTTGCAACTGTTAATTGGCCTGCTGCAAATCGCTATGCGGCACGTGTTTGTCCTCAGTACAATCGATGTGAGAAAATATTGAACTTTGGGGAGGTTTGCCTTGAACTTGTTACATGTTATTGTAGAATAAATGGAGTCAGGCCAGAAAGAATTGTTGTTTTCCGCGACGGGGTGAGTGAATACCAGTTTGACATGGTTCTTAATGAAGAGCTGCTGGATTTGAAGAAAGCATTCCAAAGATTAAATTACTTCCCTACAATCACTCTTATTGTAGCACAGAAACGACATCACACTCGATTTTTTCCAGAGGGTTGGAGGGATGGGTCTTCTAGCGGTAATATTTTGCCGGGAACAATTGTGGACACCAAAGTTACACACCCTTTTGAGTTTGACTTTTATCTTTGTAGTTACTATGGTAGCCTAGGTACAAGTAAGCCTACTCATTACCATGTCTTATGGGATGAGCACAAGTTCAAATCTGATGAATTGCAGAAGCTCATATATGAGATGTGCTTCACCTTTGCAAGATGTACTAAACCTGTATCATTAGTTCCTCCTGTGTACTATGCTGATCTTGCTGCTTATAGAGGACGGCTATACCATGAAGCCAGGGTTGGGATGCAATCCCAGAAGTCAGCAGCATCTTCATCTTCCAAAGATTCATTTGAACAGGGATTGTACAGGTTGCATGCTGACCTCGAAAACATCATGTTCTTCATCTGA 2994 0.4305 METGDGGKRTQPPPEEVTLQPEWRRRSGKPENIVLQPEWRRPRPSPEPRQQEQQPEPEWRRSTPTPTTTVWEPEWRRSRRSSSNQKPLGSSSGGGVERVRDLNDSWRRAPASASAPDYVVPKLERLQISKELPVSSCSLERKDKATPIKRPDSGGTLAVLTTRLRVNHFPVKFDPEGVILHYNVAVRPKFSSKVGKPQKLSKSDLSMVREKLFSDDPERLPLDMTAYDGANTIFSAVHLPEETFTVEITEGEDEKTVSYSVSISLVNKLRLRKLMDYLCAHTISIPRDILHGMDVVVRENPARRTISVGRHFYPSNPPLVMKDLHHGNIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKQMSVLDFLHECIDNFKLVEFYHFRKYVEEALIGLKVNVTHRKSKQKYVIAGLTPKVTRYVTFPIDDTKGWNLSKDVSLLSFFKDKYGKDIVYKDIPCLDLGKGNKKNYVPMEFCVLVDGQRCTREHLGGVAANTLKAMSLAHPNERESAIQKMVQSSDGPCGGDLIQNFGMSVNTTMTTIVGRVICPPELKLGDPNGKNIKITVDMEKCHWNLAGRSMVEGKAIERWGILDFTSYGPYKYKLRAKEFIQKLIGKYKKLGINMQEPIWYEESSTTILASYDLLSELLAKINNICKYNQGRLQFLLCVMAKKSSGYKYLKWISETKIGIVTQCCLSSSANEGEDKFYTNLALKINAKLGGSNVELSNRLPYFEGEGHVMFVGADVNHPGSRDTRSPSIAAVVATVNWPAANRYAARVCPQYNRCEKILNFGEVCLELVTCYCRINGVRPERIVVFRDGVSEYQFDMVLNEELLDLKKAFQRLNYFPTITLIVAQKRHHTRFFPEGWRDGSSSGNILPGTIVDTKVTHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFKSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARVGMQSQKSAASSSSKDSFEQGLYRLHADLENIMFFI* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2613 997 SMART PAZ_2_a_3 360 498 IPR003100 GO:0005515
Lja6g2613 997 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 52 996 - -
Lja6g2613 997 Gene3D - 542 723 - -
Lja6g2613 997 SMART DUF1785_2 306 359 IPR014811 -
Lja6g2613 997 Pfam N-terminal domain of argonaute 162 297 IPR032474 -
Lja6g2613 997 Gene3D paz domain 354 481 - -
Lja6g2613 997 MobiDBLite consensus disorder prediction 57 72 - -
Lja6g2613 997 CDD PAZ_argonaute_like 360 475 - -
Lja6g2613 997 Pfam Piwi domain 661 955 IPR003165 GO:0003676
Lja6g2613 997 ProSiteProfiles PAZ domain profile. 360 476 IPR003100 GO:0005515
Lja6g2613 997 CDD Piwi_ago-like 524 957 IPR045246 -
Lja6g2613 997 SUPERFAMILY PAZ domain 355 514 IPR036085 GO:0005515
Lja6g2613 997 Gene3D - 730 997 IPR036397 GO:0003676
Lja6g2613 997 SMART Piwi_a_2 660 958 IPR003165 GO:0003676
Lja6g2613 997 SUPERFAMILY Ribonuclease H-like 652 959 IPR012337 -
Lja6g2613 997 Pfam PAZ domain 364 485 IPR003100 GO:0005515
Lja6g2613 997 MobiDBLite consensus disorder prediction 1 98 - -
Lja6g2613 997 Pfam Argonaute linker 1 domain 307 358 IPR014811 -
Lja6g2613 997 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 52 996 - -
Lja6g2613 997 ProSiteProfiles Piwi domain profile. 660 959 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2613 Lja-Chr6 54901741 54906016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2613 109 982 Eukaryotic Initiation Factors Gene Family AT1G48410 34.532 3.01e-143 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2613 K11593 - gmx:100783571 1531.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2613 6 54901741 54906016 Lja6g2613 6 54901741 54906016 ECH