Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2610 ATGGAAGATCAAGCTGTTAATGTTGTTGTAAGAGAGGAAGAAGAAGAAGAAGAAGTTGAAGAATTTTGCAGTTGCTGTGAAGATGAAGATTTGGAAGCATGGAAGGAAACTGAGGAGCCAGTGGGTGTGGAAGGCTTGAAGGATGAGCTTGATGAATTTTCTGTAAGATTGTTTTTTAAGGGGGTGTCAATAGCTAAGGTTGAGAATTCTGGGTTTTCTGGAATTGGAGTGTTTATGGAAAGATCAGCAAGTCTTCCTGCTATAAGGGTGCAGAAAAAGCTTGAATTTTATGCAGAGGAGCCTGTAGTTGACTGCTTGGCACTCATGGATGGTTTGCTGGAAGCTGTGAAGAACAAGATCCACAAGGTTTATGCTTTCACAGATTCTGAGTTGTTGTATAATCAGATAACATCTGAAAAAGAATTGGACATGCCACTTTTGATGGCTCTGAAAGGAAGGATTTTGGAACATGCCAAGAATTTTGAAACTTTTGCTCTGAAACTCATACCTGGCACCCTTCTCGAGCAGCCGCTGCAGCTGGCTAAAGTAGCTATTGGACTTGTCACCTTCCCTGTCTATGGTGAGAGATTGCTTGAGAACTGTTCTATTTGTTGTGATGAGAAGCCAGTGTCTTTTATGGTTACATTGAAATGTTCACACAAGTTCTGTTCACATTGCTTGAGATCCTATGCTGATGGTAAAGTACAATCCTGTCAAGTCCCTATGAGATGTCCTCAACCAGGATGCAAATATTGCATCTCTGCAACTGAGTGCAAGTTTTTTCTTCCATTTACGTCCTTTGAATCTTTGGAGAAAGCCCTTTCAGAAGCAAGTATTGCCAAGTCAGATAGAATTTACTGTCCATATCCAAACTGCTCTGTTCTACTTGATCCTAGCGAATGTTTATCAGCTAGGGCCAGTTCATCTAGTCAGTCAGACAATTCTTGTGTCGAGTGTTCTGTTTGTCGGAGGTTTATCTGCGTGGAATGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAATACCAGATTCTGCCAGTGGAGGAGAGGGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAACAAAAGATGGAAGCGTTGTCAGCAATGTCGTAGAATGATTGAGCTTGCTCAAGGTTGTTACCACATGACATGCTGGTGTGGGCACGAGTTCTGCTATTCTTGTGGCGCGGAGTATAGAGATGGCCAACAGACATGTCATTGTGCATTTTGGGATGAGGACAACTCACAAGACTCCTTGACACACTCTCTTCAAGAATCAGAACAATGGGCATGTGAGACTTTCCATTCCTTCTCCATGATCATGGATCAATACTCAGACCAAGAAAGATCTCACCTCGCGCTTTTACAAAGGTTCCTGGCTGGTGATTCTGGTCTTAGTGACCATAATCCCCGCCAATCTCCTCCCCGCTTTACAGACTCGTACGTAGACCCCATGAAAGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGATAACTACTATGAAGATTACCATGCTAGATCCTACACTACCTAA 1563 0.4287 MEDQAVNVVVREEEEEEEVEEFCSCCEDEDLEAWKETEEPVGVEGLKDELDEFSVRLFFKGVSIAKVENSGFSGIGVFMERSASLPAIRVQKKLEFYAEEPVVDCLALMDGLLEAVKNKIHKVYAFTDSELLYNQITSEKELDMPLLMALKGRILEHAKNFETFALKLIPGTLLEQPLQLAKVAIGLVTFPVYGERLLENCSICCDEKPVSFMVTLKCSHKFCSHCLRSYADGKVQSCQVPMRCPQPGCKYCISATECKFFLPFTSFESLEKALSEASIAKSDRIYCPYPNCSVLLDPSECLSARASSSSQSDNSCVECSVCRRFICVECEVPWHSSMSCEEYQILPVEERDASDITLHRLAQNKRWKRCQQCRRMIELAQGCYHMTCWCGHEFCYSCGAEYRDGQQTCHCAFWDEDNSQDSLTHSLQESEQWACETFHSFSMIMDQYSDQERSHLALLQRFLAGDSGLSDHNPRQSPPRFTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYHARSYTT* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2610 520 Pfam Reverse transcriptase-like 68 170 IPR002156 GO:0003676|GO:0004523
Lja6g2610 520 Gene3D - 55 187 IPR036397 GO:0003676
Lja6g2610 520 Pfam IBR domain, a half RING-finger domain 360 409 IPR002867 -
Lja6g2610 520 Pfam IBR domain, a half RING-finger domain 272 340 IPR002867 -
Lja6g2610 520 ProSiteProfiles TRIAD supradomain profile. 197 415 IPR044066 -
Lja6g2610 520 ProSitePatterns Zinc finger RING-type signature. 218 227 IPR017907 -
Lja6g2610 520 SUPERFAMILY RING/U-box 199 275 - -
Lja6g2610 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 280 IPR013083 -
Lja6g2610 520 ProSiteProfiles Zinc finger RING-type profile. 201 245 IPR001841 -
Lja6g2610 520 SMART ibrneu5 268 340 IPR002867 -
Lja6g2610 520 SMART ibrneu5 350 409 IPR002867 -
Lja6g2610 520 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 514 IPR031127 GO:0004842|GO:0016567
Lja6g2610 520 SUPERFAMILY RING/U-box 353 417 - -
Lja6g2610 520 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 17 514 - -
Lja6g2610 520 Gene3D - 338 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2610 Lja-Chr6 54876612 54881368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2610 35 400 C3H Transcription Factor Family AT2G19610 25.385 2.38e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2610 - - gmx:100784508 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2610 6 54876612 54881368 Lja6g2610 6 54876612 54881368 ECH