Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2605 ATGACCAACGGCACCGGGTGTTCTCCTAATGATAAGGGCTTGTCTCTCAGTCCTAATCTCGAAATCACGATCGATGAGGAATCTCCAAACAGTGAGCAACTACTTGAGATTGAGGATGAGGGCAACAGGCTTGAGACTAGCTGTGGTCAGTTATTTGAGATTGATGGAAGCAAACATGAAAATGGGAGGTATGAAACAACAATAGTTGATAGTAATAGTGGAGAATCTCAAGGAAAAGAGTACCCTCCACCAGTTGTGGGAATGGAATTTGATACTTATGATGATGCCTACAACTATTACAATAGCTATGCCAAGGAAACTGGATTTGGCATTCGGGTTAAATCTTCGTGGACCAAACGCCACAGCAAAGAGAAGCGTGGTGCTGTGCTGTGCTGCAACTGTGAAGGTTTCAGAACAATTAAAGAAGCAAATAGCCACAGGAAAGAAACAAGAACTGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAAGTTGGATGAAGTCAAGCTTGAGCATAATCATTCATTTGATCCTGAGAGAGCACAAAACTCTAAATCACATAAGAGGGTGGAAAGTGGGGCCAAAAGAAAAGTTGAGCCAACTCTAGATGTTGAGGTACGCACAATCAAGTTATATCGAATGCCAGTTGTAGATACATCAGGTTATGGGAGCTCAAATTCTAATGAAGGAAGAGGTAGCAACACCATTAATTTTTCCAGACGTTTGAAACTTAAAAAAGGCGATGCAGAACTTATTTCAAATTACTTCTGCCGCAGTCAACTAAAGAATCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAACTGAGGAATATATTTTGGATTGATTCTAGATCGAGGGCTGCATATAGTTATTTTGGTGACGTGATTGCATTTGACTCAACATATTTGTCAAACAATTATGAGATTCCACTGGTTGCATTCGTCGGTGTTAACCACCATGGGCAGTCTTTTTTGCTAGGCTGTGGTCTGCTTGCGGATGAGGCATTTGAGACGTATATTTGGTTATTTAGGGCATGGCTTACATGTATGTCTGGTCGACCTCCACAGACCATTATTACAAACCAATGTAAGACCATGCAAAGTGCAATAGCAGAGGTTTTCCCTAGAGCTCACCACAGAATTTCTCTATCACAAGTCATACAGAGCATTCTTGGATGTTTGGTGCAGTTTCAGGAATATGAGGTATTTCAGATGGCACTGACTAAAGTGATATATGACCCCAAAACAGTAGATGAATTTGAAAGGGCTTGGGATGATCTGACCCAGCGCTTCGGCATAAGAAATCATGAAAAGCTTCAAACCTTGCATGACGAACGAGAGCATTGGGCTCCAATTTACTCCAAGGACACATTCTTTGCTGGAATTTCTGATTATGAAAAGGGTGAGTGTGTCATTCCCTTTTTCAAGGGTCATGTACATCAGCAAACTACCTTGAAAGATTTTTTTGAGATTTATGAGTTAGTTCTGCAGAAAAAGCAAAAAACTGAAGCTCTTGATGATTTGGAGTCACAGAGCTCGAGCCCATTACTGAAGACTAGATGCTACTATGAGTTGCAACTCTCTAAACTGTACACAAATGCAATATTCAGGAAGTTCCAAGATGAGGTGTTGATGATGCCCACTTGTTTTAACGTCTCAGAAATTCAAACAAATGGGTCTGCAGTGACGTACATGGTAACCGAACACGAAGGGTTAGAATCTTCATCACATGCAAGGCATTTTGAAGTGATGTATGATAAAGCCGGCGCAGAAGTACGCTGCATTTGTAGTTGCTTTAACTTCAAGGGCTACCTGTGCAGACATGCTTTGTATATCCTTAATTATAATGGTGTGGAGGAAATTCCATGCCAGTATATTTTATCAAGATGGAGGAAGGATTTTAAGAGATTGTATGTACCTCATCTCAGCTCCAATAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCCATGCAAATTGTTGAAGAAGGGATGATATCCCGAGATCATTATATGGCTTCTTGGCAAGCATTTAGAGAGTCTTTGAATAAGATTCGCCTTGTAGCAGATAGATAA 2118 0.4042 MTNGTGCSPNDKGLSLSPNLEITIDEESPNSEQLLEIEDEGNRLETSCGQLFEIDGSKHENGRYETTIVDSNSGESQGKEYPPPVVGMEFDTYDDAYNYYNSYAKETGFGIRVKSSWTKRHSKEKRGAVLCCNCEGFRTIKEANSHRKETRTGCLAMIRLRLVESNRWKLDEVKLEHNHSFDPERAQNSKSHKRVESGAKRKVEPTLDVEVRTIKLYRMPVVDTSGYGSSNSNEGRGSNTINFSRRLKLKKGDAELISNYFCRSQLKNPNFFYVMDLNDDGQLRNIFWIDSRSRAAYSYFGDVIAFDSTYLSNNYEIPLVAFVGVNHHGQSFLLGCGLLADEAFETYIWLFRAWLTCMSGRPPQTIITNQCKTMQSAIAEVFPRAHHRISLSQVIQSILGCLVQFQEYEVFQMALTKVIYDPKTVDEFERAWDDLTQRFGIRNHEKLQTLHDEREHWAPIYSKDTFFAGISDYEKGECVIPFFKGHVHQQTTLKDFFEIYELVLQKKQKTEALDDLESQSSSPLLKTRCYYELQLSKLYTNAIFRKFQDEVLMMPTCFNVSEIQTNGSAVTYMVTEHEGLESSSHARHFEVMYDKAGAEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPHLSSNNVDISNPVQCFDHLYKRAMQIVEEGMISRDHYMASWQAFRESLNKIRLVADR* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2605 705 Pfam FAR1 DNA-binding domain 98 182 IPR004330 -
Lja6g2605 705 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 32 703 - -
Lja6g2605 705 ProSiteProfiles Zinc finger SWIM-type profile. 589 625 IPR007527 GO:0008270
Lja6g2605 705 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 32 703 IPR031052 GO:0006355
Lja6g2605 705 Pfam MULE transposase domain 303 395 IPR018289 -
Lja6g2605 705 MobiDBLite consensus disorder prediction 179 202 - -
Lja6g2605 705 SMART 26again6 600 627 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2605 Lja-Chr6 54816702 54822095 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g2605 MULE 9.2e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2605 K17604 - gmx:100796448 1234.55