Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2603 ATGGTCAAACTGGGTTCCATTCAGCAAACAACATTTGGAGAGATGGAAGAGACCTCTCTCTGCTGTGAAGATTTGCCACATGGGGAATGTATTGAGGTTCATAAAGATGAAGATGCTGCACTAATTGAATTAGATTCTCAAAATGGGTTTTCTGAAGGAAGAAAGGAATTTGATGCACCTGCTGTTGGAATGGAGTTTGAGTCATATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGTTTTTGTGTAAGGGTTAAGAATTCATGGTTCAAACGAAATAGCAGAGAAAAATACGGTGCTGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAACCATTTGAGAAAAGAGACAAGAACTGGATGTCCTGCAATGATGAGGATTAGGATAGCGGAGTCTCAGAGATGGCGGATAATTGAGGTCATACTTGAACATAACCACATTTTAGGTGCTAAGATACACAAATCAGCTAAGAAGATGGGAAATGGAACTAAAAGGAAGTCATTGCCTAGTTCTGATTCTGAGGTGCAAACAGTTAAGTTATACCGTCCACTTGTGATAGATGCAGGAGGTAATGGTAATTTAAACCCAAGTGCAAGAGATGACCGAACTTTCTCTGAAATGTCTAATAAGTTGAACGTTAAAAGGGGTGACACACAGGCCATTTATAATTTCCTTTGCCGCATGCAATTGACTAATCCAAATTTCTTTTATTTGATGGATTTCGATGATGAAGGGCATTTGAGGAATGCATTCTGGGCTGATGCTAGATCCAGGGCTGCATGTGGTTATTTTGGAGATGTTATTTATTTTGACAATACTTATTTGTCAAGCAAATATGAAATCCCTCTTGTGGTTTTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAGGCTGTGGTCTACTTGCAGGTGAAACAACAGAGTCTTATATATGGTTGTTTAGAACATGGGTTACATGTATGTCTGGATGTTCTCCCCAAACTATTATTACAGACAGGTGCGAGGCTTTGCAGAGTGCAATCATAGAGGTCTTTCCTAAATCTCATCATTGTTTTGGCTTGTCATTAATTATGAAAAAAGTACCAGAAAAATTGGGAGGGTTGCACAATTATGATGGTATCAGGAAAGCACTTATTAAAGCAGTTTATGAGACATTGAAAATCAGTGAATTTGAAGCAGCATGGGGAATTATGATTCAACGTTTTGGAGTTAGTGATCATGAGTGGCTTCGTTCTCTATATGAAGATCGAGTTCGTTGGGCACCCGTATTTTTGAAGGATGTATTTTTTGGTGGAATGTCTGCAGCACGCCCTGGTGAGAGCATTGGTCCATTTTTTGGTAGATATGTGCACAAACAGACTCCTTTGAAGGAGTTTCTTGATAAGTATGAATTAGCTCTGCACAAGAAGCACAAGGAAGAATCTTTGGCAGATACTGAATCAAGAAACTCAAGCCCTGTGCTGAAAACTAGATGTTCTTTAGAGTTGCAGCTCTCCAGAATGTACACAAGAGAAATATTCATGAAGTTCCAATTTGAAGTGGAAGAAATGTTTTCTTGTTTTGGCACAACACAATTACATGTGGATGGTCCCATCGTAATTTACTTGGTCAAGGAGCGCGTTTTGATCGATGGAAACAGACGGGAGATTAAGGATTTCGAAGTTGTGTACAGTAGGGCAGCAGGTGAACTTCGTTGCATCTGCAGTTGCTTTAACTTCTATGGATATTTATGTCGGCACGCGCTGTGTGTGCTCAATTTTAATGGGGTGGAAGAGATACCTTTCAAGTACATTCTTTCACGGTGGAAGAAAGATTACAAGCGCCTTCATGTTCCTGATCATAGTTCTGTTAGCGCTGATGATACTGACCCTATTCAATGGTCTAATCAGTTATTTAGTAGTGCCCTACAAGTTGTCGAGGAAGGCACAATTTCTCTGGATCATTACAATGTAGCGCTGCAGGCCTGTGAAGAATCACTGAGTAAGGTTCATGATGTAGACCAGAGACAGGACTAA 2046 0.3983 MVKLGSIQQTTFGEMEETSLCCEDLPHGECIEVHKDEDAALIELDSQNGFSEGRKEFDAPAVGMEFESYDDAYNYYICYAKEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRTKDVNHLRKETRTGCPAMMRIRIAESQRWRIIEVILEHNHILGAKIHKSAKKMGNGTKRKSLPSSDSEVQTVKLYRPLVIDAGGNGNLNPSARDDRTFSEMSNKLNVKRGDTQAIYNFLCRMQLTNPNFFYLMDFDDEGHLRNAFWADARSRAACGYFGDVIYFDNTYLSSKYEIPLVVFVGINHHGQSVLLGCGLLAGETTESYIWLFRTWVTCMSGCSPQTIITDRCEALQSAIIEVFPKSHHCFGLSLIMKKVPEKLGGLHNYDGIRKALIKAVYETLKISEFEAAWGIMIQRFGVSDHEWLRSLYEDRVRWAPVFLKDVFFGGMSAARPGESIGPFFGRYVHKQTPLKEFLDKYELALHKKHKEESLADTESRNSSPVLKTRCSLELQLSRMYTREIFMKFQFEVEEMFSCFGTTQLHVDGPIVIYLVKERVLIDGNRREIKDFEVVYSRAAGELRCICSCFNFYGYLCRHALCVLNFNGVEEIPFKYILSRWKKDYKRLHVPDHSSVSADDTDPIQWSNQLFSSALQVVEEGTISLDHYNVALQACEESLSKVHDVDQRQD* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2603 681 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 33 677 - -
Lja6g2603 681 SMART 26again6 574 601 IPR006564 GO:0008270
Lja6g2603 681 Pfam MULE transposase domain 276 370 IPR018289 -
Lja6g2603 681 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 677 IPR031052 GO:0006355
Lja6g2603 681 Pfam FAR1 DNA-binding domain 74 157 IPR004330 -
Lja6g2603 681 ProSiteProfiles Zinc finger SWIM-type profile. 563 599 IPR007527 GO:0008270
Lja6g2603 681 Pfam SWIM zinc finger 551 595 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2603 Lja-Chr6 54804386 54808128 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g2603 MULE 1.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2603 K17604 - gmx:100796448 1196.8