Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2600 ATGTCTAACCCGAAAACAGAGGAGGTTGTATGCGTCACCGGAGCCAACGGGTTCATCGGCTCATGGCTGGTCCGAACCCTGCTGGAGAAACACAACCCACGCTACACCATCCATGCCACCACCTTCCCCTCCTCCGACCCCACCCACCTCTTCACCGTCCACCCGGAAGCCCATTCCCGCATCACCATCTTCCCCGCCGACATCCTCGACTCCGCCGCCGTCTCCCGCGCCATCCACAACTGCTCCGGCGTCTTCCACGTGGCCTCCCCCTGCACGCTCGACGACCCGGAAGATCCTCACAAGGACCTGATCCAGCCCGCTGTACAGGGAACACTCAACGTCCTCGAAGCTGCCAAGCGCGCCGGCGTGAGGCGCGTGGTGCTCACCTCCTCGATTTCGGCATTGGTCCCGAATCCCAACTGGCCGGAGGGAAGGGCCGTTGATGAGTCGTCGTGGACGGATGTGGAGTTCTGCGAGTCGAGGCGGAAGTGGTACCCGGTGTCGAAGACCGCGGCGGAGAGGGCGGCGTGGGAGTTTAAGGAGAAGCAGGGTGGTGCTGAGGTGGTGGCGATTCATCCTGCCACGTGTTTGGGCCCGCTGCTGCAGCCGGAGTTGAATGCTAGCTCCGCCGTGCTGCAGCGGCTGATGACGGGGTATAGGGACACGCAGGAGCATTACTGGTTGGGTGCGGTGCATGTTAAGGATGTTGCTAGAGCTCAGGTCTTGCTTTTTGAGACCCCCACTGCTGCGGGTAGATATCTATGCACCAATGGTATCTACCAGTTTTCTAGTTTTGCCAGCATTGTGTCTGAATTGTACCCTGATTTCCCTGTTCACAGGTTCCCAGAGGAAACTCAACCTGGCCTTACTCCATGTAAAGATGCAGCAAAGAGGCTAATAGACTTGGGCCTCGTCTTCACACCAATTCAAGATGCTGTGAGAGATGCAGTTGAGAGCCTCATAGCTAAAGGGTTCCTGGAGCTACCACCCACACAGAAATAG 1002 0.5828 MSNPKTEEVVCVTGANGFIGSWLVRTLLEKHNPRYTIHATTFPSSDPTHLFTVHPEAHSRITIFPADILDSAAVSRAIHNCSGVFHVASPCTLDDPEDPHKDLIQPAVQGTLNVLEAAKRAGVRRVVLTSSISALVPNPNWPEGRAVDESSWTDVEFCESRRKWYPVSKTAAERAAWEFKEKQGGAEVVAIHPATCLGPLLQPELNASSAVLQRLMTGYRDTQEHYWLGAVHVKDVARAQVLLFETPTAAGRYLCTNGIYQFSSFASIVSELYPDFPVHRFPEETQPGLTPCKDAAKRLIDLGLVFTPIQDAVRDAVESLIAKGFLELPPTQK* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2600 333 Pfam NAD dependent epimerase/dehydratase family 10 249 IPR001509 -
Lja6g2600 333 CDD FR_SDR_e 10 304 - -
Lja6g2600 333 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 316 - -
Lja6g2600 333 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 320 IPR036291 -
Lja6g2600 333 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 316 - -
Lja6g2600 333 Gene3D - 2 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2600 Lja-Chr6 54783405 54786542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2600 7 326 Monolignol Biosynthesis Gene Families AT2G02400 68.438 9.31e-167 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2600 - - gmx:100795399 536.184