Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2587 ATGGGCTCGGAGAATGAAATTTCTCCGGCCGATGGTCACAAAGCTCCCGGCAAGGAGCAACAAGCCGCCGGCGTCGGAATCCTTCTTCAGATCATGATGTTGGTCTTGTCCTTCGTTCTCGGCCACGTTCTCCGTCGCAAGAAGATTTACATCATCCCTGAAGCCAGTGCTTCTCTTCTCATAGGGTTAATTGTTGGAATACTAGCTAACATTTCTGACACTGAAACTAACATCAGGGCTTGGTTCAATTTTCATGAGGAGTTTTTCTTCTTGTTCTTGTTACCTCCCATCATATTTCAGTCTGGCTTCAGTCTCTCACCTAAACCGTTTTTCTCAAATTTTGGAGCGATTGTGACATTTGCTATATTCGGCACCTTATTAGCTTCCGTTGTAACCGGTGTCTTGGTTTATCTTGGTGGGCTGGTGTTCCTCATGTATAGACTACCTTTTGTTGAGTGCCTGATGTTTGGTGCTCTTATATCAGCAACCGACCCCGTTACTGTTTTGTCCATATTTCAGGAGCTGGGCACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAACGATGCAATGGCAATTTCTTTGTACAGGACAATGTCATTGGTTAAAACTCATCCATCTGGACAAAATATATTCATGGTGATTGTTCGATTTTTGGAGACTTTTGTTGGGTCAATGTCAGCAGGTGTTGGAGTTGGGTTTATATCTTCTTTGCTATTTAAGTATGCAGGGTTGGATATTGACAGCCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCATATTTCTCGTATATGCTTGCTGAAGGCCTTGGTCTGTCTGGAATCGTATCAATACTATTCACAGGAATAGTCATGAAGCATTATGCATATTCAAATTTGTCACAAAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCACTAGCCGAAACATTTGTATTTATATACATGGGATTTGATATAGCTATGGAGCAACATAGCTGGTCTCATATTGGATTCATATTCTTCTCCATTATATTCATTGGAATTGCAAGAGCGGCAAATGTCTTCTCTTGTGCTTATCTGGTTAATCTGGCAAGACCAGCTCATCGAAAGATACCTGTAAAACACCAGAAAGCACTTTGGTACAGTGGACTTCGGGGAGCCATGGCCTTTGCCCTCGCTTTGCAATCAGTTCACGATCTTCCGGAAGGACATGGACAGACCATCTTCACTGCAACTACAGCAATAGTTGTTTTGACGGTATTACTGATTGGTGGTTCAACAGGAACCATGCTTGAAGCTCTAGATGTTGTAGGTGGAGACAGTCCAAACGATAGCCCTTTGGCTTCAATTGGTTCCGTCCCAGCAAGTTTTGCAACAAATAATGTTTATGAGGGGAACATTGGTTATGTTGCTCCTTCATACGATGAAGAATCATCTTCATCTGGGAACAAAATCAAGATGAAGCTAAAAGAATTCCACAAGAGTGCTGGGTCTTTTACAGCATTAGATAGAAACTACCTTACCCCATTCTTTACTAGTCAAAATGGAGATGAAGCCGAGCCTTTTACTTCTCCAAGATCAGGATTTAATGGCCAGAACCATTATTCATCATGA 1626 0.4157 MGSENEISPADGHKAPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKIYIIPEASASLLIGLIVGILANISDTETNIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGAIVTFAIFGTLLASVVTGVLVYLGGLVFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVKTHPSGQNIFMVIVRFLETFVGSMSAGVGVGFISSLLFKYAGLDIDSLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHYAYSNLSQSSQRFVSAFFELISSLAETFVFIYMGFDIAMEQHSWSHIGFIFFSIIFIGIARAANVFSCAYLVNLARPAHRKIPVKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVVGGDSPNDSPLASIGSVPASFATNNVYEGNIGYVAPSYDEESSSSGNKIKMKLKEFHKSAGSFTALDRNYLTPFFTSQNGDEAEPFTSPRSGFNGQNHYSS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2587 541 Pfam Sodium/hydrogen exchanger family 33 436 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lja6g2587 541 MobiDBLite consensus disorder prediction 514 541 - -
Lja6g2587 541 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja6g2587 541 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja6g2587 541 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja6g2587 541 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja6g2587 541 Gene3D - 150 201 - -
Lja6g2587 541 PANTHER SODIUM/HYDROGEN EXCHANGER 6 10 522 - -
Lja6g2587 541 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 31 445 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja6g2587 541 PANTHER SODIUM/HYDROGEN EXCHANGER 10 522 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2587 Lja-Chr6 54654132 54662454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2587 20 460 Antiporters AT3G05030 33.261 3.61e-56 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2587 K14724 - gmx:100790830 884.019