Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2580 ATGTCTCAGTTCAATGGGGATGAAATGGAGTATGCTGCAGATGAAAATGAAATGGCGGAAGTAGAAGATGATGTGTATTTCCGTGGCAGAGGATATGGTGAATCGGATTCAGATGATGATGAAGATGATGAATATGACCCTCTGGAAAACAGAATAACAGATACCACTGCTGCTGAAGCTAGGAGGGGAAAGGATATTCAAGGTATACCTTGGGATAGACTGAGTATTAGTCGTGAAAAATATAGACAAACTAGACTAGAGCAGTACAAGAATTATGAAAATATACCCCAATCAGGGGAACTGTCAGAGAAGGAATGCACACCCACAGATAAGGGTGGAATGTATTATGATTTTTGGCAGAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAATTGAGGAACTTGGTTTGGTCGACATCAAAGCATGATGTATATCTTGTTTCACATTACTCAATTGTTCACTGGTCTTCATTAAATTCTAAAAGATCTGAAGTCTTGAATGTATCAGGGCATGTAACTCCGTGTGAGAAACACCCAGGAAGCCTCTTGGAGGGTTTCACACAGACACAAATAAGTACACTGGCTGTACGAGATAACTTGTTAATTGCTGGAGGCTTTCAAGGGGAACTTATTTGCAAGTACTTAGATAGACCCGGGGTTAGCTTTTGTTCCCGAACTACTTATGAGGACAATGCAATTACTAATGCTGTTGAGATTTATGACAATCCCAGTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTGTGTTGTTAGAGACTTTGATATGGAGAGATTTCAGCTTTCAAAGCATTTCAGCTTTCCTTGGCCAGTAAATCATACTTCATTGAGCCCTGATGGGAAACTAATTGCAATTGTTGGAGACAACCCAGAATCGATACTGGTGGATTCTCAAACTGGAAAGACTATGGGATTTTTATGCGGACACTTGGATTATTCATTTGCATCTGCATGGCATCCTGAGGGCCGTATTTTTGCCACTGGGAACCAAGACAAAACATGTCGCGTTTGGGATGTTCGAAACTTGTCGAAGTCTGTTGCTGTTCTTAAGGGAAACCTTGGAGCTATACGCTCGATACGGTTCTCATCTGATGGACAGTTCATGGCAATGGCTGAGCCAGCTGACTTTGTGCATGTATATGATGCAAAGCATGGGTTTGAGAAGGAGCAGGAGATTGATTTTTTTGGGGAGATCTCTGGTGTATCTTTTAGCCCTGACACAGAATCACTTTTTATTGGTGTTTGGGATCGCACCTATGGAAGCCTTTTTCAGCTCAATCGGCGCAGAAACAATATGTATCTCGACTACTTGTAA 1341 0.4139 MSQFNGDEMEYAADENEMAEVEDDVYFRGRGYGESDSDDDEDDEYDPLENRITDTTAAEARRGKDIQGIPWDRLSISREKYRQTRLEQYKNYENIPQSGELSEKECTPTDKGGMYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSHYSIVHWSSLNSKRSEVLNVSGHVTPCEKHPGSLLEGFTQTQISTLAVRDNLLIAGGFQGELICKYLDRPGVSFCSRTTYEDNAITNAVEIYDNPSGAVHFMASNNDCVVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLIAIVGDNPESILVDSQTGKTMGFLCGHLDYSFASAWHPEGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFSSDGQFMAMAEPADFVHVYDAKHGFEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLFQLNRRRNNMYLDYL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2580 446 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Lja6g2580 446 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 445 - -
Lja6g2580 446 SMART WD40_4 267 305 IPR001680 GO:0005515
Lja6g2580 446 SMART WD40_4 308 347 IPR001680 GO:0005515
Lja6g2580 446 SMART WD40_4 351 390 IPR001680 GO:0005515
Lja6g2580 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Lja6g2580 446 MobiDBLite consensus disorder prediction 1 47 - -
Lja6g2580 446 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 9 445 - -
Lja6g2580 446 Gene3D - 236 442 IPR015943 GO:0005515
Lja6g2580 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 350 - -
Lja6g2580 446 Pfam Uncharacterised protein domain (DUF2415) 363 399 IPR019417 -
Lja6g2580 446 SUPERFAMILY WD40 repeat-like 191 427 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2580 Lja-Chr6 54541906 54547537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2580 303 427 Miscellaneous Gene Families AT5G08390 27.200 1.16e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2580 - - gmx:100788712 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2580 6 54541906 54547537 Lja6g2580 6 54541906 54547537 ECH