Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2577 ATGTATCATCCAAAAATTCAAAATGTTCCTAGTTCAACTTTAATTGGAAGCAATTCATTAGTTCATGGTCAGCACATAGATTGTGGTGACAGCACAATGGATCCTGGCAATGGTGGAAACAGTCTTAGCAACAACTCTAATCTCACTTCAAAACAACGTTTGCGGTGGACACATGAACTACATGAACGCTTTGTCGATGCTGTGGCTCAACTTGGTGGGCCTGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTATCATGTCAAAAGTCACTTACAGAAATACCGACTAGCAAAATATCTGCCTGACTCCTCTTCTGATGAAGGAAAAAAAGCTGATAAGAAAGAAACAGGGGATATGCTTTCCAATCTAGATGGTTCATCTGGGATGCAGATTACAGAAGCACTAAAGCTTCAAATGGAGGTCCAGAAGCGACTACATGAACAATTGGAGGTGCAGAGGCAGCTACAATTAAGGATAGAAGCCCAGGGTAAATACTTGAAAAAGATAATTGAAGAGCAACAGCGGCTCAGCGGGGTTTTTTCAGAGGCACCTGCAGATGTGTGCCGAGAGCCTGATAACAAGACTGACCCTGCAACCCCAGACCCAGAAAAAGCTGCCAAACAACATGCTCCGGCGAAGAGTCTTTCAATTGAATCTTTTTCATCTCACCATGAACCAATGACACCAGATTCCGCTTGCCATGTCGGTTCCCCTGCTGACAGCCCGAAAGAGGAGAGATCAGCGAAGAAGCAACGAGTAAGCATGGATGGAGCATATTCTAAACCAGACATTGTGCTTCCACATCAGATACTCGAGTCAAGCATGCCATCATACCAGCAACCAACCACTGTTTTCCTTACTCAAGAGCACTTTGATTCTTCTTTGGGTATATCTACCAGAAGTGAGGAATTGGAGAAGATTGGTGGTAGCAATCTGTGA 966 0.4431 MYHPKIQNVPSSTLIGSNSLVHGQHIDCGDSTMDPGNGGNSLSNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVFSEAPADVCREPDNKTDPATPDPEKAAKQHAPAKSLSIESFSSHHEPMTPDSACHVGSPADSPKEERSAKKQRVSMDGAYSKPDIVLPHQILESSMPSYQQPTTVFLTQEHFDSSLGISTRSEELEKIGGSNL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2577 321 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677
Lja6g2577 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 6 313 - -
Lja6g2577 321 SUPERFAMILY Homeodomain-like 49 105 IPR009057 -
Lja6g2577 321 MobiDBLite consensus disorder prediction 190 270 - -
Lja6g2577 321 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
Lja6g2577 321 MobiDBLite consensus disorder prediction 110 128 - -
Lja6g2577 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 313 IPR044848 GO:0003700
Lja6g2577 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 108 IPR017930 -
Lja6g2577 321 MobiDBLite consensus disorder prediction 196 217 - -
Lja6g2577 321 Gene3D - 50 109 - -
Lja6g2577 321 Pfam MYB-CC type transfactor, LHEQLE motif 138 184 IPR025756 -
Lja6g2577 321 Coils Coil 141 161 - -
Lja6g2577 321 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2577 Lja-Chr6 54519687 54527510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2577 86 321 G2-like Transcription Factor Family AT2G01060 64.898 1.81e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja6g2577 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2577 - - gmx:100786925 536.184