Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2576 ATGTATCCGAGGCTCATACACCCCCATGAAGGGATGATTGGCCATGACGGTGGGGGTGTCCCTAACCACAAGGGTGACCCTTGTCTTGTTTTGACTGCTGATCCAAAACCTCGCCTTCGTTGGACTCAGGACCTCCATGAACGATTTGTTGATGCTGTCACCCAGCTTGGAGGTCCTAGTAAAGCTACACCGAAAGCTATCATGCGGACCATGAATGTCAAGGGTTTAACTCTGTTTCATTTGAAGAGCCATCTTCAGAAATACAGACTTGGTAAGCAATCAGGGAAAGATTTTAGTGAGGGATGCAAAGATGGTATATCAGGTTCATATCTTTTAGAAAGCCCTGGTTCTGATAACCCTTCTCCAAAGTTGCCAACATCTGATACAAACGAGGGTTATGAAATCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTGCAAGTGGAGGCCGAGAAGCACTTGCAGATTCGCCAGGAAGCGGAGCGGAGATACATGGCCATGGTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTAGCGCTACAGTTACAGGCACTGATAACCAAAAGTTTCAAGGAATTGGAAGTAAAGCACCAAGAGGTTCCTTGGTTGATCATCCTGGTTTTTACTCCTTGCCGTCGACTGAGGCGGCTGGAGTGAGTGTTCCCGAAGAAGAAAGACCTCACAATCTCCCATCCCAAAGAGCTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAGAGTTCTGGGGGATTGGTCTTAGAAGGATCTCCAAGTGAGGGGAGAAGAAGGATGCTGGGAATGGATTCTTTTGCAGCACCTTTGATCTGGAGTGAAGCTAAGATGAAAACTCAAGCCATCAATCTAGCCCATGGTAATTCTCATGGAATATCTAGGTATGGCATGTAA 930 0.457 MYPRLIHPHEGMIGHDGGGVPNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDFSEGCKDGISGSYLLESPGSDNPSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQEAERRYMAMVERACKMLADQFISATVTGTDNQKFQGIGSKAPRGSLVDHPGFYSLPSTEAAGVSVPEEERPHNLPSQRADCSTESCLTSHESSGGLVLEGSPSEGRRRMLGMDSFAAPLIWSEAKMKTQAINLAHGNSHGISRYGM* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2576 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 309 IPR044848 GO:0003700
Lja6g2576 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Lja6g2576 309 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 309 - -
Lja6g2576 309 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Lja6g2576 309 MobiDBLite consensus disorder prediction 109 129 - -
Lja6g2576 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Lja6g2576 309 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Lja6g2576 309 MobiDBLite consensus disorder prediction 112 128 - -
Lja6g2576 309 Pfam Myb-like DNA-binding domain 39 89 IPR001005 -
Lja6g2576 309 Gene3D - 35 93 - -
Lja6g2576 309 MobiDBLite consensus disorder prediction 225 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2576 Lja-Chr6 54511929 54517826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2576 16 252 G2-like Transcription Factor Family AT3G24120 46.185 9.48e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja6g2576 Myb_DNA-binding 3.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2576 - - gmx:100782369 522.702