Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2562 ATGTGTGATCTTGCTTTGTCCTTCGCTCGCCATATCCTTCTTCCAATGGCGGATTTAGCCAATCAGATAAAGGGCCTCCCAGTAGAAGTTCAAAAAATGAAAGATGAACTGGAAAAGATTACAACCTCCATTTATGAAGCTGATAGAATGTTTGCAGCTGAAGAAGACGAGGAAAGGGTGAAGCAGCTGGTGGAAAGAGCTTTTCACTTAGAAGACATTATCGATGAATTCATGATCTGTGAGCAATGGAAGCCTGCTCATGATCCTCCATTTGCAGCTTTACCCTCTGAGGCTGCTAGCTTCATCAAAACAATGAGCCTCCGTCTTCAAACAGCGTGTAAGATCAAGTTCTTTAAATGGCATCAGAGCAATGAAAAAGATGATGGGTTACAAGTCTCATCTTCTTCACAACAAGGACCAAGCAGTTCTAATGGATACCAAGATGTCGCGGTGCAGCGCTTCCAAGATGCTGCTCTTCTCCTGAATGAAACTGAAGTTGTGGGGTTTGAATCCCCCAAAAAAACTTTGATTGATTGGTTGGTAAGCGGAAGAGAAGAGCGCACTGTCATCTCAGTCGTAGGAATGGGAGGGCAGGGGAAAACCACAGTTGCCAAGCAAGTGTTCAACAACAAAAAGGCGACTGGGCCTTACCGTGCATGGGTCACGGTGTCTCAGTCATACACCGTGGAGGGGATATTGCGGGACATGTTGCTGGCGTTTTACAAAGAACAAAACGAGTCTCCCCCTAGCGACATTTCCACGATGAATCGAGTGTCATTGAAAACTGAAGCACGATACTACTTGCAAGAAAAGAGGTATGTCGTGTTCTTTGATGATGTATGGAACACACACTTTTGGGATGACGTTGAGCATGCTTTAATTGATAATAAACTTGGAAGTAGGGTGTTCATCACAACAAGGGATGGGAATCTGCAACCTTTAACTGAAAAGAAATCTCTAGAGCTCTTTTGTAAGAAGGCATTCTTTGACTTGAATGGAAATTGTCCCCGAAATCTTGTGAAAATATCTTCTGAAATTGTTAACAAATGCAATGGTTTACCATTAGCAATTGTAGCCATGGGGGGTGTTTTAGCTGCCAAAAAGAGAGATGTATTTGTTTGGGAAGATTTTAGTAAATATCTAAGTTCAGAACTGGAGAAGGATCCGAGTTTAAATGGTATAGGAAAGATTCTGGGTATTAGTTATGATGATTTGCCTGCCTCTCTCAAACCTTGCTTATTGTATTTTGGTATGTATCCTGAAGACTATGAAGTTAAACAAGAGAGAGTGATTTGGCAATGGATAGCCGAGGGGTTTATCAAGGAGAAAAATGGAAAATCTGTGGAGAAAGTGGCGAAAGGTTATTTAACAGAATTGGTGAGTAGAAATTTGGTGCAAGTCGTTGATGTTGATGATGATGAAGATGATTTAGCAAGGGGTGAAAGTTATCGAGTCCATGACCTATTACGTGACATGATCCTTAAAAAATCTGAAGATTTAAGTTTCTGCCAATTTATTTCTAAAGATGATCAGTCAACATTATGTGTTAAAAGTCGACGCCTATCAATGGCAACGAGTTCCAATGATTTCATGTTAAGTACAGAAGGCTCATATATCCGTTCATTGCTTTTTTTCATTGAGTTCATGGAGGAACAATTTCCTAAACTCTTAAGGATAATCCCCATAAAATACAAGCTATTGAAGGTTGATAGAACCCAGAAAATGTAG 1728 0.4057 MCDLALSFARHILLPMADLANQIKGLPVEVQKMKDELEKITTSIYEADRMFAAEEDEERVKQLVERAFHLEDIIDEFMICEQWKPAHDPPFAALPSEAASFIKTMSLRLQTACKIKFFKWHQSNEKDDGLQVSSSSQQGPSSSNGYQDVAVQRFQDAALLLNETEVVGFESPKKTLIDWLVSGREERTVISVVGMGGQGKTTVAKQVFNNKKATGPYRAWVTVSQSYTVEGILRDMLLAFYKEQNESPPSDISTMNRVSLKTEARYYLQEKRYVVFFDDVWNTHFWDDVEHALIDNKLGSRVFITTRDGNLQPLTEKKSLELFCKKAFFDLNGNCPRNLVKISSEIVNKCNGLPLAIVAMGGVLAAKKRDVFVWEDFSKYLSSELEKDPSLNGIGKILGISYDDLPASLKPCLLYFGMYPEDYEVKQERVIWQWIAEGFIKEKNGKSVEKVAKGYLTELVSRNLVQVVDVDDDEDDLARGESYRVHDLLRDMILKKSEDLSFCQFISKDDQSTLCVKSRRLSMATSSNDFMLSTEGSYIRSLLFFIEFMEEQFPKLLRIIPIKYKLLKVDRTQKM* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2562 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 416 IPR027417 -
Lja6g2562 575 PANTHER DISEASE RESISTANCE PROTEIN RP 29 560 IPR044974 GO:0006952
Lja6g2562 575 Gene3D - 11 112 - -
Lja6g2562 575 PANTHER - 29 560 - -
Lja6g2562 575 PRINTS Disease resistance protein signature 267 281 - -
Lja6g2562 575 PRINTS Disease resistance protein signature 189 204 - -
Lja6g2562 575 PRINTS Disease resistance protein signature 350 364 - -
Lja6g2562 575 Pfam NB-ARC domain 171 404 IPR002182 GO:0043531
Lja6g2562 575 Gene3D - 402 497 IPR036388 -
Lja6g2562 575 Pfam Rx N-terminal domain 17 85 IPR041118 -
Lja6g2562 575 Gene3D - 150 316 IPR027417 -
Lja6g2562 575 Gene3D - 317 401 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2562 Lja-Chr6 54388042 54389814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2562 190 369 WRKY Transcription Factor Family AT5G45050 28.856 8.92e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2562 K13457 - gmx:100787762 497.278