Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2552 ATGGACTCAAAAAGTGGCACCAGAGCTCTCCCAAAGCATAATAATCAGAAGACACCTGGGATTCAAACCCTTGAGGCAAAGGATAACAAGCCTTCTTCACTGCTGGTTTCGAAGACGGGCAAACCCGAGCTTGCTGCTTCAGAAGATTTGTCTAAGTCTGTACAAAACACGTCGAAGCAGAATCCTGGGGAAATTTCTGAAAGCAAGAGGTTGGGAGCTTCAATCCAAAAGGGGTTCGCTGATTCCTTGAGTAAAGTTGGTTCTGGTGCTTCCTCATCAGTTCTTGATAAAACATCTGGAGAATTGGATCGTGCTGTTAATGAGAACGTAGGCTCACAGAAAAGCTCTATCGATCATGGAAAAAAGACATCGGAATACGGAAGTGTGAAGAACAGTTCTGTTTCTGCCAAAGTTAGTGATGGGGCCAGCAGTCTTGCAAAGACAAGTGGAAGCGCCAAGATCAGCGATCGAGCTGATTTTGTGGAGAGTGGTAAGAGCAGTATTTGCAGAGGAAGTACAAGCAGTGATGTGAGCGATGAGAGTACTTGCAGTAGCTTCAGTAGCAGCGTAAACAAGCCTCACAAGGCCAATGACATGAGATGGGAAGCTATCCAAGTGGTTCGAGCTAGAGACGGGGTATTGGGTTTAGGTCACTTTAGACTACTGAAGAGGTTGGGCTGTGGGGATATTGGCAGTGTATACCTCTCAGAGTTAAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCAAGTCGTAAAAAGCTACTTCGTGCTCAGACAGAACGAGAAATTCTGCAGTCACTTGACCACCCTTTTCTCCCAACTTTGTACACCCATTTTGAGACAGAGAAATTCTCTTGCTTGGTAATGGAATTCTGCCCAGGTGGAGACCTCCATACTCTTAGGCAGAAACAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAGGTCCTACTGGCTATGGAGTACCTCCACATGCTTGGGATTGTCTACCGTGACCTTAAGCCTGAAAATGTCCTTGTTAGGGATGATGGACATATTATGCTTTCTGACTTTGATCTTTCCCTCCGATGTGCTGTTAGCCCAACCCTCGTTAAATCCTCATCCATAGATTCTGAGCCTTTAAGAAAGAATTCTGCTTATTGTGTTCAGCCTGCATGTATTGAGCCGCCTTCTTGCATCCAGCCTTCCTGTGTTGCTCCTACTTCATGCTTTTCACCTCGTCTCTTTTCTAGCAAATCAAAGAAGGACCGGAAGCCTAAAAACGAAATAGGCAACCAGGTGAGTCCATTACCGGAACTCATTGCCGAGCCTACCGATGCTCGGTCCATGTCATTTGTTGGAACACATGAATACTTGGCACCTGAGATCATTAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGAATCTTTCTATATGAGCTGTTGTTTGGTAAAACTCCTTTTAAGGGATCGGGGAACCGAGCGACGTTGTTTAATGTTGTAGGCCAACCCTTGCGGTTCCCAGAAGCACCTGTTGTCAGTTTTGCAGCAAGGGATCTTATAAGGGGGCTGCTTGTAAAGGAACCACAGCACAGATTGGCATATAAAAGAGGCGCTACTGAGATTAAGCAACATCCCTTTTTTGAAGGTGTGAATTGGGCATTGATCCGTTGTGCTACCCCACCTGAGATCCCAAAGGCTGTAGAGTTTGAGAAGATACCTTCCCCAGCCTCATCAACTGGCGAAAAGGCTGTTAGCAATATGCCGCCAGCAAATCAGAAAGGCTCTGATAATTATCTGGAGTTCGATTTCTTCTAG 1845 0.4569 MDSKSGTRALPKHNNQKTPGIQTLEAKDNKPSSLLVSKTGKPELAASEDLSKSVQNTSKQNPGEISESKRLGASIQKGFADSLSKVGSGASSSVLDKTSGELDRAVNENVGSQKSSIDHGKKTSEYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSVNKPHKANDMRWEAIQVVRARDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSSIDSEPLRKNSAYCVQPACIEPPSCIQPSCVAPTSCFSPRLFSSKSKKDRKPKNEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPASSTGEKAVSNMPPANQKGSDNYLEFDFF* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2552 614 MobiDBLite consensus disorder prediction 1 72 - -
Lja6g2552 614 MobiDBLite consensus disorder prediction 8 36 - -
Lja6g2552 614 Pfam Protein kinase domain 220 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2552 614 Pfam Protein kinase domain 454 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2552 614 Gene3D Phosphorylase Kinase; domain 1 217 302 - -
Lja6g2552 614 SMART serkin_6 219 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2552 614 MobiDBLite consensus disorder prediction 585 607 - -
Lja6g2552 614 MobiDBLite consensus disorder prediction 107 133 - -
Lja6g2552 614 CDD STKc_phototropin_like 218 575 - -
Lja6g2552 614 ProSiteProfiles Protein kinase domain profile. 219 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2552 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672|GO:0006468
Lja6g2552 614 MobiDBLite consensus disorder prediction 588 603 - -
Lja6g2552 614 PANTHER FLIPPASE KINASE 1-RELATED 4 614 - -
Lja6g2552 614 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 4 614 - -
Lja6g2552 614 MobiDBLite consensus disorder prediction 165 189 - -
Lja6g2552 614 MobiDBLite consensus disorder prediction 166 189 - -
Lja6g2552 614 SUPERFAMILY Protein kinase-like (PK-like) 193 579 IPR011009 -
Lja6g2552 614 MobiDBLite consensus disorder prediction 422 441 - -
Lja6g2552 614 MobiDBLite consensus disorder prediction 49 67 - -
Lja6g2552 614 Gene3D Transferase(Phosphotransferase) domain 1 451 575 - -
Lja6g2552 614 Gene3D Transferase(Phosphotransferase) domain 1 303 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2552 Lja-Chr6 54321282 54326440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2552 40 614 AGC Kinase Gene Family AT5G47750 77.509 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja6g2552 Pkinase 2.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2552 K08286 - gmx:100781600 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2552 6 54321282 54326440 Lja6g2552 6 54321282 54326440 ECH