LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g2550	ATGTTAACTGAGACCTTGCACCATTCAGATGAAGTTGTGACCATGGACAACTCCCACCACTACTACAGCCAAGGCAGCACCACCACCACCACTGTGAGTGAGATAGAGGAAGAGTGCTCCACCCAGTTGCACTTGAATGATGGTCCTATGACAACAATTAGTGAAGAGAAGGAGAAGGAGGGAGAAGAAGAAGAGCCTGTTTATGTGGCAGTGGGTAAGAGCCAGACTAGCATGGAAGCTCTGTCATGGACCCTCAACAATTTGGTTACTCCATCTACTACACTCTATCTCATACATGTTTTCCCAGAGATCAAGCATATTCCCAATCCTTTGAATGTGTGCTTTCACTGTGTTTGTGTGATGACAGTGGGAGTGGGAATGGTTCCAAAGGACCAAGTGAGTACTGAGCAAGTGGAGAGCTATATGGCCCAAGAAAGAGGTAAGAGGAGGGAGCTTCTACACAAGTTCATCCAATTATGCTCTGCTTCCAAGGTTAAGGTGGACACCATTCTGATTGAGAGTGACTTGATTGCAAAGGCTATCATTGATCTCATTCCCATTCTTCAAATAAGAAAACTTGTGATTGGAACAAACAAATCCCAATTAAGAAAACTAAGGTCTAAGAAAGGGAACAGCATGGCTGATCAGATACTTCAGAATGCACCAGAAAGTTGCAAGGTAAGAATTATATGTGAAGGGGAGGAAGTAAATCAACAGACAGCTAATGATACTTCAATGTCCCACAAAGAAGAAGACCAGAAAAATGATTGGTTTTCATCACTTTCATGTATTTGCTTTTGA	801	0.427	MLTETLHHSDEVVTMDNSHHYYSQGSTTTTTVSEIEEECSTQLHLNDGPMTTISEEKEKEGEEEEPVYVAVGKSQTSMEALSWTLNNLVTPSTTLYLIHVFPEIKHIPNPLNVCFHCVCVMTVGVGMVPKDQVSTEQVESYMAQERGKRRELLHKFIQLCSASKVKVDTILIESDLIAKAIIDLIPILQIRKLVIGTNKSQLRKLRSKKGNSMADQILQNAPESCKVRIICEGEEVNQQTANDTSMSHKEEDQKNDWFSSLSCICF*	267

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g2550	266	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	13	266	-	-
	Lja6g2550	266	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	67	222	-	-
	Lja6g2550	266	Gene3D	HUPs	44	230	IPR014729	-
	Lja6g2550	266	CDD	STK_N	66	233	-	-
	Lja6g2550	266	PANTHER	ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN	13	266	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g2550	Lja-Chr6	54315230	54317522	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g2550	70	245	Plant U-box Gene Family	AT5G57035	28.889	1.31e-14	71.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g2550	-		-	aprc:113852731	308.916