Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2546 ATGAGTGAACAATTGGGGGTGCTAAAAGTACGAGTTGCGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGAGCAGTGATCCCTATGTGGTGCTCAAACTTGGGAATCAGACTGCAAAGACCAAGGTCATTAACAGCTGTTTAAATCCTGTTTGGAATGAAGAGCTGAATTTCACTCTCACAGAACCCTTGGGAGTTCTCAATTTGGAAGTGTTTGATAAAGATCTTCTGAAGGCTGATGACAAGATGGGAAATGCTTTTGTCAACCTTCAACCACTAGTCTCAGCAGCTAGATTAAGGGATATTTTACGAGTTTCTTCGGGTGAGACAACATTAAGGAAGGTGGTGCCTGATAGTGAAAACTGTCTTGTCCGTGAAAGCAGTATCAATTGTGTTAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGCGATGTAGAATCTGGGGAGGTAGAACTGACAATCAAGTTGATCACACCAGTTGCTCCCTCAAAATAG 501 0.4331 MSEQLGVLKVRVAQGKRLVIRDFKSSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFVNLQPLVSAARLRDILRVSSGETTLRKVVPDSENCLVRESSINCVNGEVVQNVWLRLRDVESGEVELTIKLITPVAPSK* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2546 166 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Lja6g2546 166 PRINTS C2 domain signature 22 34 IPR000008 -
Lja6g2546 166 PRINTS C2 domain signature 46 59 IPR000008 -
Lja6g2546 166 PRINTS C2 domain signature 67 75 IPR000008 -
Lja6g2546 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 162 IPR044562 -
Lja6g2546 166 CDD C2_ArfGAP 5 150 - -
Lja6g2546 166 Pfam C2 domain 6 99 IPR000008 -
Lja6g2546 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 11 1 162 - -
Lja6g2546 166 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 159 IPR035892 -
Lja6g2546 166 Gene3D C2 domain 3 163 IPR035892 -
Lja6g2546 166 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2546 Lja-Chr6 54272572 54274960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2546 1 159 C2H2 Transcription Factor Family AT4G05330 44.025 2.10e-38 132