Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2539 ATGGACCTCTTCACCGCCGACCAAGTTTCCCCATTCCCCGACTCCGGCCACCTCCTTTACCCCTCCGACCTCCTCTCCCACCGCCACAACCCCCAGAAACTCCGCCCCATCAGGTCCATCCCCTCCTCCTCCACTCCTCCTTACCTCGACTCATCTCACAACCTCCGATCCCCTTCTCCTGCTCTTGAAACTCCCCTCCAGACGCAGGATCCGGCGGCTTCCGGGTCGGGTCTCAACCCGTTTCCCCACCAAGTGCAAGAGCCTGACTGGTTCTTGGATGATGATGATGATAAAGATGATGGTGGTGATGATGATGATAATGAAGATGAGAATTCATCAGTAAGTAATAAAGAACCTGGCTCTAGAAAGAGGAGGAAAAAGACGACGAGAAAGCTTGCAGATTTTGCGCAAAAATTGGTAAGGAAGGTGATGGAAAAGCAAGAGCAGATGCATAATGAATTGATGGTTATGATAGAGAAAAAGGAAAGGGAAAGAATAGAGAGAGAAGAAGCTTGGAGGCGTGAGGAGATGATAAGGATTAAAAAGGATGAAGAGGCTAGAGCTCAAGAGAGGTCTCGTAATTTGGCCGTCATATCTCTCATTCAGAACATATTGGGCTATGAAATTCAAATTCCCCAAGCAGCAGAAGGAAGCAGCAAAAGCAAAGAGGGTGAAGTTGAGGCGAACGTTCGAAGAGATTTCTACAATGATCTAAGCAAAAAAAGATGGCCTGATGTTGAAGTACAAGCACTGATAACTCTAAGAACTTCATTGGAGCACAAGTTTCGTCAGTTGGGATCAAAAGGATCAATATGGGAGGAGATATCCGCAGCAATGCATGGCATGGGCTACAACCGTTCTGCAAAGAAGTGCAAGGAGAAATGGGAAAACATGAACAAGTACTATAAGAGGACCAAAGGGAACGGCAAGAAGTGGCCCTTACTTAATTTGAAAACTTGCCCTTACTTTACTGAGTTGGAAATTCTGTATAAAAACGGGCTCCTTAGTCAAGGAAATGCGTTGAGCAATGCCAACGATGTTCCCAAGGTTGAAGAAAAGGAATGCAGTGAAACTTCTTGA 1080 0.462 MDLFTADQVSPFPDSGHLLYPSDLLSHRHNPQKLRPIRSIPSSSTPPYLDSSHNLRSPSPALETPLQTQDPAASGSGLNPFPHQVQEPDWFLDDDDDKDDGGDDDDNEDENSSVSNKEPGSRKRRKKTTRKLADFAQKLVRKVMEKQEQMHNELMVMIEKKERERIEREEAWRREEMIRIKKDEEARAQERSRNLAVISLIQNILGYEIQIPQAAEGSSKSKEGEVEANVRRDFYNDLSKKRWPDVEVQALITLRTSLEHKFRQLGSKGSIWEEISAAMHGMGYNRSAKKCKEKWENMNKYYKRTKGNGKKWPLLNLKTCPYFTELEILYKNGLLSQGNALSNANDVPKVEEKECSETS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2539 359 Gene3D - 243 304 - -
Lja6g2539 359 CDD GT1 241 306 - -
Lja6g2539 359 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 7 354 - -
Lja6g2539 359 Coils Coil 144 164 - -
Lja6g2539 359 SMART sant 239 301 IPR001005 -
Lja6g2539 359 MobiDBLite consensus disorder prediction 90 111 - -
Lja6g2539 359 PANTHER - 7 354 - -
Lja6g2539 359 SUPERFAMILY Homeodomain-like 238 301 IPR009057 -
Lja6g2539 359 MobiDBLite consensus disorder prediction 36 81 - -
Lja6g2539 359 ProSiteProfiles Myb-like domain profile. 235 299 IPR001005 -
Lja6g2539 359 MobiDBLite consensus disorder prediction 1 130 - -
Lja6g2539 359 Pfam Myb/SANT-like DNA-binding domain 241 327 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2539 Lja-Chr6 54190635 54192784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2539 123 332 Trihelix Transcription Factor Family AT5G47660 46.222 5.47e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja6g2539 Myb_DNA-bind_4 4.9e-21 CL0123