Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2538 ATGGCAGAATCAGACAACGAGTCAGGGGGTCAAACTGGTGGTGGTCACACCGGTGAACTGTTGGGGTGCAGAGAGCAAGACAGGTTCCTCCCCATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCGGCGAACGGCAAGATCTCAAAGGAAGCCAAAGAGACTGTGCAGGAGTGTGTTTCAGAGTTCATCAGTTTCATAACAGGGGAGGCTTCAGACAAGTGCCAGAAAGAGAAGAGGAAGACAATCAACGGTGATGATCTACTGTGGGCCATGACGACGCTTGGATTTGAAGATTATGTGGAGCCACTCAAGATTTACCTGCACAAGTATAGGGAGATGGAGGGGGAGAAAACTGGTGGAATGGTGCAGAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAGTCAGAGTGAACAGAGAGATTTGAATAATGCTGCAGGTGAGAGTTATGGTCATGGTATGCCATCATCCCATCATGTGATGATGATGATGGGGCATCATCAACATCAGAGCCATATGTATGGTGGATCTGGGAGTGGATCAGGATCACCATCTTCTGGGAGGAGTACTAGATAG 588 0.5 MAESDNESGGQTGGGHTGELLGCREQDRFLPIANVSRIMKKALPANGKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGEKTGGMVQSGGGGGGGGGGGRSQSEQRDLNNAAGESYGHGMPSSHHVMMMMGHHQHQSHMYGGSGSGSGSPSSGRSTR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2538 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 179 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja6g2538 195 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g2538 195 ProSitePatterns NF-YB/HAP3 subunit signature. 60 76 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lja6g2538 195 Gene3D Histone, subunit A 22 153 IPR009072 GO:0046982
Lja6g2538 195 MobiDBLite consensus disorder prediction 119 195 - -
Lja6g2538 195 MobiDBLite consensus disorder prediction 176 195 - -
Lja6g2538 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
Lja6g2538 195 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 179 - -
Lja6g2538 195 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Lja6g2538 195 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Lja6g2538 195 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Lja6g2538 195 SUPERFAMILY Histone-fold 26 130 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2538 Lja-Chr6 54187107 54188752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2538 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.167 7.86e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja6g2538 CBFD_NFYB_HMF 1.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2538 K08065 - gmx:100305641 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2538 6 54187107 54188752 Lja6g2538 6 54187107 54188752 ECH
Lja4g4348 4 77024736 77025382 Lja6g2538 6 54187107 54188752 PCT