Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2526 ATGTTGTCTGTTCCTTCAAAAAACATTTGGATTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTATGTTACACATGATGAAGTTGATGCTGAAGAGGGTTCTGCAGCATCAGAATTGGTGAATGCAGAGAAAGCTTTATCTGGAGCTATGATTACCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGATTTTCTATTAGGAAAGAAAGGTCTAGGATTAGCCCTCAGTTGGGCATTTACAAACGCGACTTTGTTTGTTACCGGTCCGGTTTTGCTCCGATGAAGAAGAAGCCCAATGGAGAGCATCATAGGGATAGAAAATCGGTGAGGTGTGGATGTGATGCGAAAATGTATTTGTCGAAGGAGGTTGTGGAAGGGGTTTCACAATGGTTTGTTGTGCAGTTTAGTGATGTACACAATCATGAACTTTTGGAAGATGATCAAGTTCGCCTTCTGCCTGCGTATCGTAAGATTCACGAGGCGGATCAAGAGCGTATACTCTTGCTTTCGAAAGCCGGGTTTCCGATACATAGAATTGTGAAAATGCTTGAGCTGGAAAAGGGGATTCAAGGTGGGCAACTTCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTTCAGAACCGTAAGAAGATTGTTCAAGAGAATGAGGTGTTGCTCAGTGAGAAAAGAGAAAACGATACACTGGAACTTCTTGAGGTTTGCAAAGCCGTGAAAGAAGCGGATGATGGCTTTGTTTACGATTTTACAGTGGATGAGAATGACAAGGTTGAAAATATAGGTTGGTCATATGGTGACTCTATTAATGCAAATGCTATGTTTGGTGATGTAGTTTACTTTGACACTACTTATCGATCAATCACTTATGGATTGGTTTTTGGAGTATGGTTTGGTATCGATAGCTATGGTAGAACCATTTTTTTCGGTTGTGTCTTATTGCAGGATGAAACACCCCAATCCTTCACATGGGCATTACAGGCTTTTATCCGGTTCATGAGAGGAAGATGTCCACAAACAGTTCTATCTGATCTAGACCCTGGGCTTAGAGATGCCATTAGAAACGAATTTCCAGCTACTAAACAAGTAATTCCTCTGTCGAAGATTCTAAACAAGTTGCCAAGCTGGTATTCTTTTCCTCTTGGGCCTCGCTATGCAGAATTTAGATCAGAGTTTGATGCCTTATTTCACATTGAGAATACAGAAGAATTCGAACTTCAATGGAGTCAAATGGTTTCTGTGTATGGACTTGGCTCAGATAAACACACTGACTTACTGTATTCTGTTCGAGCATCCTGGGCGCAATGCTATGTAAGAGGCTATTTTTTGGCCCGAATGGCAACAATGTCTTACTCCAAATCTATAGATGCTTTTCTGAAAGGGGTCTTCACTGAACAACATACATGTTTGCGTAGCTTTTTTGAGCAGGTTGGTATTTCTGCAAATTTGCAACATCAATCACATCAGGGGACTCAATATGTGCATCTCAGAACTTGCATACCCATCGAAGAGCATGCTCAGAGTATTCTCACGCCTTTTGCCTTCAATTGTTTGCAGCAAGAATTATTGCTGACAATGCAATATGCTACATCTGAAATGGCCAATGGATCATATATTATAAGACACTTCAAAAGGATGGAAGAAGAATGGCTCGTAATGTGGTTGGCTGATACTGAACAGATACACTGTTCTTGCAAAGAATTTGAGTCCTCAGGAATATTATGCAGACATGCTCTTCGTGTATTTGTGTTGAAGAATTACTTTCAGTTGCCTGACAACTACTATTTAAGTCGATGGAGACGGGAATGCGCTTTACTTGTTGATGATGATCATAATAATCAAAGTACTGGTGGGGAATGGTTTCAAGAATACCATTCCCTAGCTGAAACTTTATTTTCAGAATCATCAATTACTAGGGAGCGATCTCACTATGTTCGCAAAGAATTGACAAAAGAATTAACTAGGATTCTTGATGAAGTTAGAAATTTACCCGAGACTGATGTGACCAGCATGAACATGACTGTTTCGCCAACCGGCTAG 2082 0.4054 MLSVPSKNIWIRRQQCPCGDWKCYVTHDEVDAEEGSAASELVNAEKALSGAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPMKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSDVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKIVQENEVLLSEKRENDTLELLEVCKAVKEADDGFVYDFTVDENDKVENIGWSYGDSINANAMFGDVVYFDTTYRSITYGLVFGVWFGIDSYGRTIFFGCVLLQDETPQSFTWALQAFIRFMRGRCPQTVLSDLDPGLRDAIRNEFPATKQVIPLSKILNKLPSWYSFPLGPRYAEFRSEFDALFHIENTEEFELQWSQMVSVYGLGSDKHTDLLYSVRASWAQCYVRGYFLARMATMSYSKSIDAFLKGVFTEQHTCLRSFFEQVGISANLQHQSHQGTQYVHLRTCIPIEEHAQSILTPFAFNCLQQELLLTMQYATSEMANGSYIIRHFKRMEEEWLVMWLADTEQIHCSCKEFESSGILCRHALRVFVLKNYFQLPDNYYLSRWRRECALLVDDDHNNQSTGGEWFQEYHSLAETLFSESSITRERSHYVRKELTKELTRILDEVRNLPETDVTSMNMTVSPTG* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2526 693 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 28 683 - -
Lja6g2526 693 Pfam MULE transposase domain 292 381 IPR018289 -
Lja6g2526 693 ProSiteProfiles Zinc finger SWIM-type profile. 564 600 IPR007527 GO:0008270
Lja6g2526 693 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 683 IPR031052 GO:0006355
Lja6g2526 693 Pfam FAR1 DNA-binding domain 69 160 IPR004330 -
Lja6g2526 693 SMART 26again6 575 602 IPR006564 GO:0008270
Lja6g2526 693 Pfam SWIM zinc finger 571 596 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2526 Lja-Chr6 54131160 54134331 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g2526 MULE 1.4e-14 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2526 - - gmx:100817107 1225.31