Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2522 ATGTCTGCTTCTGCTGCTGTTGGTGAGGTTGCTGCTGCTCCTGTTTTTGTGGCTTGGGAGGAGCAGGTGATATGCCAGGAACGTGGGAGCCGTGTGGTTCACTTTTACTTGAAGGATGCGGCGGGGAATTCGGTGCTGGCTGTTGTGGGGACTGAGAGGAGTGTGAGGCACATGATGTATGTTGTCCCTGACCAATTTGTGCAGGCTTATGGATCCACTTTTCCCATCAACGCGTGTAAGTGGAGGGCGAGGAGAGAGGTTGCCGACTGGCTCACTTGTTTGGTCTCGCAGAACCGTCCACACCCTGCAGGTGTACAGCTGGATGATTCAGCACAAGTTGTAGAATCTCTCAAGATGTTAACAGCTGGAATCAATGGAATCAATGTTAACAAAAAAACTTTACCTGACAAGCTGATTTCTAGGAAGTTGAAATTTCAAAGTTCAGATATTGAATGGTCAGGCACTGCTTGGTTTTGTGCAAAACAGCTGAAGCACTACTCAGGGTTCTGCAGGAATGGGACGACCATATATGTTCATTCATTTGTTTACATAATGGCTGAAGAGGAAAACCACTATATTGGTTACTTGGAAGACATGTATGAAGACAAAAAGAAACAAAAAAAGGTAAAGGTACGGTGGTTTCACCATGGTCAGGAAGTTAAGCATGTGATACCAGAGTTGGATCTGCACGCCGGAGAGGTTTTCATCACCCCTCATGTTCAGGTGGTCAGTGCTGAGTGCGTCAATGGTCCTGCAATAGTTTTGACACCTAAGCATTTTGAGGAATACCTGGCTGCTGTGCCCCATACCTCTTTATCTGAGATCCATATTTGCTTTAGGCAGTTTAAAAACAACAAGCTTAAGCCCTTCACGCTTACCAAGCTGCGTGGATATGGTAACCAATCTATACTTTCTTGTTTGGATAGTCCTATTATCCCCAAGAGAAAGGCCAAGTGTCAAAAATCGCCCACAGGAAATGATGAGAACATCACCCAAGATGATCTCTTACTGTCCACCAATAAGAAGAGTAGAATTTCTATGGGGCATCAAGTTCTTGAAAAGGGGCCTTCTGATCTGCAAAACTCAGCTCCTATGAATGGAATGGAAAAATATGAACCAAAATACCCAAGTTTGAAATTAAAATTATCAAGAAAAACAATGGGTATCACGGTGATTGGACCTAAGCCTGAAGAGTCTCTTAAGGTTGGTGACAAGATAGAGGTTCTCTCTAATGATAGTGGCATTAGAGGATGCTGGTTTAGATGTAAAATCTTGAGCATGTCCCAGAGGCGGCTGAAGGTCCTGCATGAGGATGTGATGGATGTAGATGATGAAGGGAAACTAGAGGAATGGGTCCCTGCTTCTAGGGTGGCCGCTCCTGACAAACTGGGCATGCGATGTTCAGGCCGCTTAACTGTCCGGCCAAGCCCTCCTGAATATACTGCAGGTGATACTTTTGAGGTTGGAGCAGCAGTGGATGCCTGGTGGTGTGATGGATGGTGGGAAGGTGTGATAACTGCAGTCAATCCTAGTGGAGATGGAAAGCTGCAGGTTTATTGCCCTGGTGAAGAGAAGTTGCTATTGGTCAAGAAGAAGAATCTTCGAATTTCCCGAGATTGGATTGAGAACAAGTGGGTTGACATAATGGGAAAGCCTGACATTTGTAGCTACTTATCACCGAATGTCAGTTCCGGCATCAGGCTGTCAGCTAATTCTGCAGTGGTAGATGGTTCCGTGTCTGTAGAAAGCAAATCATCTTCAATTGCCAAAGTTGAAGTTGCTCAGAAGGTCGAGCCAGAAATATCTGGTCTGGAAGCACCTGAGGACCCGGAAAGCATGAAGGGAACAACTTTGTCGAAGCCACTTCATGCCATTGATGAAAACAAGGGTAACTCTGGTGGCAGCAGTGATGATGGCACTGACAATGCTGATGATGAAAAGAAGCCGCTTGATGCCTTTGTCGAAGAAGACAAGGACAACTCTGGTGGTGGAAGTGATGGTAGCACTGACAATGACGGCGGCGCTGACAAAACTGAAGAGAGCGAGGAAAACGTGATGATGGAGGAGAGCTTTGATTGTGCTGGAGCAAAACTTGATGCAGCGGAAGCAATACAAGTTGCATGA 2124 0.4586 MSASAAVGEVAAAPVFVAWEEQVICQERGSRVVHFYLKDAAGNSVLAVVGTERSVRHMMYVVPDQFVQAYGSTFPINACKWRARREVADWLTCLVSQNRPHPAGVQLDDSAQVVESLKMLTAGINGINVNKKTLPDKLISRKLKFQSSDIEWSGTAWFCAKQLKHYSGFCRNGTTIYVHSFVYIMAEEENHYIGYLEDMYEDKKKQKKVKVRWFHHGQEVKHVIPELDLHAGEVFITPHVQVVSAECVNGPAIVLTPKHFEEYLAAVPHTSLSEIHICFRQFKNNKLKPFTLTKLRGYGNQSILSCLDSPIIPKRKAKCQKSPTGNDENITQDDLLLSTNKKSRISMGHQVLEKGPSDLQNSAPMNGMEKYEPKYPSLKLKLSRKTMGITVIGPKPEESLKVGDKIEVLSNDSGIRGCWFRCKILSMSQRRLKVLHEDVMDVDDEGKLEEWVPASRVAAPDKLGMRCSGRLTVRPSPPEYTAGDTFEVGAAVDAWWCDGWWEGVITAVNPSGDGKLQVYCPGEEKLLLVKKKNLRISRDWIENKWVDIMGKPDICSYLSPNVSSGIRLSANSAVVDGSVSVESKSSSIAKVEVAQKVEPEISGLEAPEDPESMKGTTLSKPLHAIDENKGNSGGSSDDGTDNADDEKKPLDAFVEEDKDNSGGGSDGSTDNDGGADKTEESEENVMMEESFDCAGAKLDAAEAIQVA* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2522 707 Gene3D - 141 293 IPR043151 -
Lja6g2522 707 MobiDBLite consensus disorder prediction 640 663 - -
Lja6g2522 707 Pfam BAH domain 175 268 IPR001025 GO:0003682
Lja6g2522 707 SMART agenet_At_2 398 463 IPR014002 -
Lja6g2522 707 SMART agenet_At_2 484 542 IPR014002 -
Lja6g2522 707 ProSiteProfiles BAH domain profile. 174 293 IPR001025 GO:0003682
Lja6g2522 707 SMART BAH_4 174 293 IPR001025 GO:0003682
Lja6g2522 707 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 14 597 - -
Lja6g2522 707 MobiDBLite consensus disorder prediction 600 691 - -
Lja6g2522 707 Pfam Agenet domain 403 478 IPR008395 -
Lja6g2522 707 PANTHER BROMO ADJACENT-LIKE DOMAIN PROTEIN 14 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2522 Lja-Chr6 54095265 54101671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2522 410 542 PHD Transcription Factor Family AT5G58610 29.197 7.92e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2522 6 54095265 54101671 Lja6g2522 6 54095265 54101671 ECH