Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2521 ATGGGTCGTTCTCGAGGGAATTTTCAGCACGCCGATGAGGACCCCAACCAAAGGTCCAGGAGAAAAAAGAATGCTGCCAGTGGTGAAAATTTAGAATCTGGAGCTGCAGGTCAAGGAGTAAGTGAGGGGGGAAAGAAAGCTCTGTATCACTGCAATTATTGTAATAAAGATATTTCAGGGAAAATCCGTATTAAATGTGCCATGTGCCCGGATTTTGACTTATGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAAAAGCAATCACCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCGGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCATGGGAAACTGGACAGAAGTTGCTGAGCATGTTGGGACAAAGAACAAACAATCATGCATAGAACACTATCAGAATGTATACTTGAACTCCCCGTTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTCGCCATGGCAAAAGGGCACGGTGAGGACAAGAAAGGAATTTCTATGGGGGACCTTAGTGTAAAGGAAGAATCTCCCTTTTCTCCATCTAGAGTCAAAGTTGAAGATTCCCATAAAGCTGGTTCCGCTAACCGTTTGCCTTCCAGTTTGAATTCAGAGTTAGATTCTGGCCCTTCAGGTAGCGCACATGCAGCAGCTGGTGCTAACCAGAAGGCCTCCAATATGGCCCGAGGGAAAGGTGGTCCTGGAATCATTAAAATGGAAGATTCTCAAGGAGACAGAGATTTTGGAGGAAAGAAGCCAAATTCCTCAGGAAATGAAGGTCCTTCTTTAGTAGAAGCAAGTGGTTTTAACGCAAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTAGCTGAAATGGAATTTAAGGACAATGACACCGAGGAAGAGCGGGAGATAAAATTACGTGTCTTGCGTTTATATTCAAAAAGGCTTGATGAAAGAAAGCGTAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACTCCTGAGGAGAAGGCAATATGTCGGAGATATGACTTATTCATGCGCTTTCACTCTAAGGAAGATCACCTGGAATTGCTTAGAACAGCTATTTCTGAACACAGAACTTTTAGAAGACTTCAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCACTTCAGCTGAAGCAGAAAGATATCTGGTACAGAAGAGAAAAAGGGTAGCTGAAGAGAATGCTCTGAGGACAAAGGAAAGTGCTCTGCAGGTTGGCCCAAGCAGTCAGGCGGTTCCAAATGCATTAATGTCTCCAGACTCTACTGGCAAGGATATAAGCGTGAGACCTGCCACTTCAAGCTCTGTCAATGAAATCGATGTAACCGGATACTACGGAGCAGATTTACTTTCTGAACCTGAGAAACGCTTATGCTGCGAGCTAAGGTTGCCTCCAGCGGTGTATCTAAAGATGCAAGAGCAACTGTCTGTACAAATGATTGCTGGCAATGTCTCTACAAAATCAGATGCTCACCAATTATTCAAGATGGACACCTTCAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGATTTGGTTCACCCTGA 1674 0.4313 MGRSRGNFQHADEDPNQRSRRKKNAASGENLESGAAGQGVSEGGKKALYHCNYCNKDISGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGMGNWTEVAEHVGTKNKQSCIEHYQNVYLNSPFFPLPDMSHVVGKNRKELLAMAKGHGEDKKGISMGDLSVKEESPFSPSRVKVEDSHKAGSANRLPSSLNSELDSGPSGSAHAAAGANQKASNMARGKGGPGIIKMEDSQGDRDFGGKKPNSSGNEGPSLVEASGFNAKRQEFDPEYDNDAEQLLAEMEFKDNDTEEEREIKLRVLRLYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKAICRRYDLFMRFHSKEDHLELLRTAISEHRTFRRLQELKEARAAGCRTSAEAERYLVQKRKRVAEENALRTKESALQVGPSSQAVPNALMSPDSTGKDISVRPATSSSVNEIDVTGYYGADLLSEPEKRLCCELRLPPAVYLKMQEQLSVQMIAGNVSTKSDAHQLFKMDTFKIDRVYDMLIKKGFGSP* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2521 557 MobiDBLite consensus disorder prediction 178 286 - -
Lja6g2521 557 Gene3D - 103 154 - -
Lja6g2521 557 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 556 - -
Lja6g2521 557 PIRSF Txn_adaptor_ADA2 36 556 IPR016827 GO:0003713|GO:0006357|GO:0035065
Lja6g2521 557 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 156 IPR017930 -
Lja6g2521 557 ProSiteProfiles SANT domain profile. 104 156 IPR017884 -
Lja6g2521 557 ProSiteProfiles SWIRM domain profile. 471 557 IPR007526 GO:0005515
Lja6g2521 557 SUPERFAMILY Homeodomain-like 469 554 IPR009057 -
Lja6g2521 557 MobiDBLite consensus disorder prediction 1 41 - -
Lja6g2521 557 CDD SANT 109 151 IPR001005 -
Lja6g2521 557 Pfam Zinc finger, ZZ type 47 89 IPR000433 GO:0008270
Lja6g2521 557 ProSiteProfiles Zinc finger ZZ-type profile. 46 102 IPR000433 GO:0008270
Lja6g2521 557 MobiDBLite consensus disorder prediction 1 27 - -
Lja6g2521 557 MobiDBLite consensus disorder prediction 178 192 - -
Lja6g2521 557 SUPERFAMILY RING/U-box 49 111 - -
Lja6g2521 557 SMART zz_5 45 90 IPR000433 GO:0008270
Lja6g2521 557 Pfam Myb-like DNA-binding domain 108 151 IPR001005 -
Lja6g2521 557 MobiDBLite consensus disorder prediction 451 470 - -
Lja6g2521 557 CDD ZZ_ADA2 49 97 IPR041983 -
Lja6g2521 557 ProSitePatterns Zinc finger ZZ-type signature. 51 78 IPR000433 GO:0008270
Lja6g2521 557 Gene3D - 472 555 IPR036388 -
Lja6g2521 557 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 556 IPR034318 GO:0003713|GO:0006357|GO:0035065
Lja6g2521 557 SUPERFAMILY Homeodomain-like 102 155 IPR009057 -
Lja6g2521 557 SMART sant 105 154 IPR001005 -
Lja6g2521 557 MobiDBLite consensus disorder prediction 216 232 - -
Lja6g2521 557 Gene3D - 41 97 IPR043145 -
Lja6g2521 557 ProSiteProfiles Myb-like domain profile. 109 152 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2521 Lja-Chr6 54087142 54092343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2521 1 555 EF-hand Containing Proteins AT3G07740 46.713 1.38e-163 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g2521 Myb_DNA-binding 3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2521 K11314 - gmx:100811887 967.222