Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2513 ATGCAAGCATCTCAGAAGCACTCCACTTCATCTGGTGTCCATTTATACCACCAGCCTGTGCAGGACATTGATGCATACACTCATTACCAAATATTACAAAGCAATTCAAGCCATGGCAACAACAACAGCCATGGAGCCGCCGCTTCTTTCGAAACCTGCAAGGAGAATTACTTCACCCTGGAATCATCATCCCCAGCAGCCACCGATCTCATAGGTTGTGATTCTGCTTCCGATGCCAGTGTATCATCCAATTATAGGAGTCCTTCTCAGTCATACCATTCAGATCAGCATCAATCCTCCGACAACACCTACGGATCGCCATCAATAAGCGCGCACTCAAGCGACGACGGTAGCTACAAATTGAAGCACAAACTTCGCGAGCTCGAGATTTCATTGCTGGGGCCAGACTCAGATGCAGTTAACAGTTGCAACTGCTGCTTCAAGGGCGGACCATCTCCAATAGCTAATTACAACTGGGCACAGATTGAGGAAATGATCCCAAAGCTAGACTTGAAAGATGTCCTCATTCGATGCGCGCAGGCCGTGTCAGATGGTGATATGCAAACAGCTCTTGGCTGGATGAATAATGTGTTAGGAAAAATGGTGTCAGTTGCTGGGGATCCAATTCAGAGGCTAGGAGCTTACATGTTGGAGGGTTTAAGAGCCAGGTTGGAGTCATCAGGGAGCTTAATCTACAAAGCCTTGAAGTGTGAACAACCAATTACAAGCAAAGAGCTTATGAGTTACATGGACATTTTGTATCAAGTTTGCCCATATTGGAAATTTACTTACATATCTTCCAATGTTGTTATTGGAGAAGCAATGCAAAATGAATCCAGAATTCACATAATTGACTTCCAAATCACACAGGGCACACAGTGGTTATTACTTATCCAGGCTCTAGCGTCTAGACCCGGCGGTCCTCCATTCATTCGTGTGACCGGTGTTGATGATTCACTATCGTTCGATGCTCGGGGCGGCGGACTTCATATTGTTGGAAAAAGGTTATCAGATTTTGCAAAGTCTTGTGGGGTGCCATTTGAGTTCCACAGTGCTGCCATGTCAGGCTGTGAGGTTGAGCTTGAGAACCTTGTAATTCGACCCGGGGAAGCTCTGGCTGTGAATTTTGCGTTTTTTCTGCACCACATGCCGGACGAAAGCGTGAGCACAGAGAATCACCGAGACAGGTTGCTGAGATTGGTGAAGAGCTTGTCGCCAAAGGTTGTGACCCTTGTTGAGCAAGAATCCAACACAAACACTTCTCCATTTTTCCAAAGGTTTGTCGAGACATTGAGTTACTACTCTGCCATGTATGAGTCAATAGATGTCGCCCTCCCTAGAGATGATAAGAATAGGATCAGTGCGGAGCAGCACTGCGTAGCGCGTGACATTGTCAACATGATTGCTTGCGAGGGGGCGGAGAGGGTGGAAAGGCATGAGCTCTTTGGAAAGTGGAGGTCAAGATTTTCAATGGCAGGTTTTGTGCCATGCCCCTTGAGTTCCTCAGTGACAGCTTCAGTTAGAAATATCTTGAATGAGTTCAATGAGAATTATAGGCTTGAACATAAAGATGTTGCTCTATATCTTACTTGGAAGAACAGAGCTATGTGTACCGCTTCTGCATGGAGATGTTTCTAA 1638 0.4597 MQASQKHSTSSGVHLYHQPVQDIDAYTHYQILQSNSSHGNNNSHGAAASFETCKENYFTLESSSPAATDLIGCDSASDASVSSNYRSPSQSYHSDQHQSSDNTYGSPSISAHSSDDGSYKLKHKLRELEISLLGPDSDAVNSCNCCFKGGPSPIANYNWAQIEEMIPKLDLKDVLIRCAQAVSDGDMQTALGWMNNVLGKMVSVAGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPITSKELMSYMDILYQVCPYWKFTYISSNVVIGEAMQNESRIHIIDFQITQGTQWLLLIQALASRPGGPPFIRVTGVDDSLSFDARGGGLHIVGKRLSDFAKSCGVPFEFHSAAMSGCEVELENLVIRPGEALAVNFAFFLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMYESIDVALPRDDKNRISAEQHCVARDIVNMIACEGAERVERHELFGKWRSRFSMAGFVPCPLSSSVTASVRNILNEFNENYRLEHKDVALYLTWKNRAMCTASAWRCF* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2513 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 542 IPR005202 -
Lja6g2513 545 Pfam GRAS domain family 172 543 IPR005202 -
Lja6g2513 545 MobiDBLite consensus disorder prediction 82 116 - -
Lja6g2513 545 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 542 - -
Lja6g2513 545 MobiDBLite consensus disorder prediction 82 115 - -
Lja6g2513 545 ProSiteProfiles GRAS family profile. 162 543 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2513 Lja-Chr6 54040794 54044352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2513 1 543 GRAS Transcription Factor Family AT4G17230 56.443 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja6g2513 GRAS 2.2e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2513 - - gmx:100819190 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2513 6 54040794 54044352 Lja6g2513 6 54040794 54044352 ECH
Lja4g4328 4 76853546 76856350 Lja6g2513 6 54040794 54044352 PCT