Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2509 ATGGAAATGGACCCTGGCAAGCTTTTCATTGGTGGGATTTCCTGGGACACAAATGAAGAACGACTCAGACAGTATTTCCAGAACTTTGGAGATGTGGTTGAAGCTGTGATAATGAAGGATCGCACCACGGGGCGTGCCCGTGGTTTTGGATTTGTTGTTTTTGCCGATCCTTCTGTTGCTGAGCGAGTTGTTATGGAAAAGCATGTCATTGATGGTAGAACTGTGGAAGCAAAAAAGGCTGTCCCTAGAGATGATCAGAATGTTCTGAGCAGAAGCAACAGCAGCAGTCATGGGTCGCCAGTTCCTTCTCCTGTCCGCACAAAGAAGATATTTGTTGGAGGTCTACCATCCACAATTACTGAGAGTGATTTTAAGAACTACTTTGATCAGTTTGGAACAATTACAGATGTTGTCGTGATGTATGACCATAACACACAAAGGCCTAGAGGTTTTGGATTCATAACCTTTGATTCTGAGGAAGGAGTTGAGAAAGTTCTGTACAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCCAAGGAATTATCTCCAAGTCCAAGTAGAGGCCAGTTAGGTGGATATAGTTATGCTATGAGTAGAGTTGGTAGCTTTGCTAATGGTTTCACTCAGGGATATAATCCAGGCATGGTTGGAGGCCATGGACTTAGAATAGATGGTCGGTTGAGTCCGGTTACTGTTGGTCGTAGCGGATATCCTCTTTTGAGTCCTAATTATGGGTCAGAACTCAACTTTGAGCTACCATTGAGCCAAAATGAAAGTGCAAACTTTACATCTAACTTCGTCATAGGACGGGCGCTGAACTCTTCATACAATGGAAGTCCGAGCAGGTACAATAATGCCATGGGGTATGCTGGTTCAAGCATTGGCAACAATGCAACCATAAGTTCAAGTTCAATAAATCAAAATTTGTGGGGGAATGGGAATCTTTATGGTGCTACTAACCCTGCAACCTCTAATGCTTTTGTTGGTTATGGAAGTGAAAATTCAAGCATGGGTTCTCTTGGTGGTATTGGATCACTTTGGAGTTCCTCCCTTGGTAATAATCAAGCTGGAACTATTGGCTCTGGATATGGTAAGGGAAGTCTTAGTTATAGGTCCGGAGATGTGATTTTAGGGTCAAAAACAGTAGATTATGGAAGAAGCAGTGAAAGCACTGTTGCATCAGCTCCATTGTATACTTTATCAAATGGAAATTATGATGAGGCATTCAAAGATACTTATGAAGCTGGGCCATTTTATCGTGACCAGACTTGGAGGTCATCAGCTTCAGAACTAGACGATTCTGGCAGTCTTGGTTTGGGTTTTGAAAATGCTGTTTCAGATTTAATGAGCAAAGGCTCGGGAGGTCACATCGGCGCTTATGCTGTTGCTAGTAGACAATCAAATAGAGGAATTGCTGCTTAG 1443 0.4255 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLSRSNSSSHGSPVPSPVRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENSSMGSLGGIGSLWSSSLGNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSNGNYDEAFKDTYEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNRGIAA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2509 480 SMART rrm1_1 109 181 IPR000504 GO:0003723
Lja6g2509 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lja6g2509 480 Gene3D - 5 88 IPR012677 -
Lja6g2509 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Lja6g2509 480 MobiDBLite consensus disorder prediction 86 102 - -
Lja6g2509 480 MobiDBLite consensus disorder prediction 81 104 - -
Lja6g2509 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 480 - -
Lja6g2509 480 SUPERFAMILY RNA-binding domain, RBD 104 205 IPR035979 GO:0003676
Lja6g2509 480 SUPERFAMILY RNA-binding domain, RBD 4 99 IPR035979 GO:0003676
Lja6g2509 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 168 IPR000504 GO:0003723
Lja6g2509 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Lja6g2509 480 Gene3D - 105 193 IPR012677 -
Lja6g2509 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lja6g2509 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 480 - -
Lja6g2509 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lja6g2509 480 CDD RRM2_DAZAP1 106 185 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2509 Lja-Chr6 53991921 53996492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2509 8 223 Eukaryotic Initiation Factors Gene Family AT2G36660 27.706 7.56e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2509 K14411 - qsu:111995590 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2509 6 53991921 53996492 Lja6g2509 6 53991921 53996492 ECH