Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2502 ATGGTTTCGTTAGAGGAATCTCGCTCCAATTCGAGCCGTTTCCCCTTATCGCAAACCTTCCTCCACCACCACCACCACTCCTCCAAAACGCAGCGTCACATAGGCAGGTCCATGCGCACCATCCGCTCCAACTTCTTCCAAGACGACAACAGCAGCACCTGCTCCTTCACCGAGAAATCCACCTGCTTCTCGGAAAATCTCACCGACTCCGTCGTCGACCTCCGCCTCGGTGAACTCGCCACCCGGAGCAACAAATCTCACAGATCCTCGTTCGCCGACGAGGACCTTCTCGATCTCTCGCAGGCCTTCAGCGACTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGTTACAGCGCCTCGCTACACTTCCCTCGCCGGAGTATTTCCCCGACGCCGCCGGAGATGAAAATCCCCAGCCTGAGCCGGAGCCTTGCATGGGGTTTCTGCAGAGGGAGAATTTCTCAACCGAGATCATCGAGAGCATCTCCCCGGAGGATCTTCAGCCGACGGTGAAGCTCTGCATCGACGGGCTCCAGTCTACATCTGTCAACGTGAAGCGATCCGCGGCGGCGAAGCTGAGGCTACTTGCGAAGAATCGCGCTGATAACCGTGTTCTGATCGGGGAATCTGGTGCGGTTCCTGTTCTCGTTCCGCTGCTTCGGTGCAGCGATCCGTGGACGCAGGAGCATGCGGTGACGGCGCTGTTGAACCTGTCACTCAATGATGAGAACAAGAAGCTGATAACCAATGCCGGAGCTGTGAAGTCGTTGATTTATGTGCTGAAGACGGGGACGGAGACTTCGAAGCAGAACGCGGCGTGTGCTTTGCTGAGCCTTGCGTTGGTGGAGGAGAACAGGAGCTCGATCGGCGCTTCCGGGGCGATACCGCCGCTGGTTTCGCTGCTGATAAATGGTTCCAGTAGGGGGAAGAAGGATGCGCTGACAACGCTGTACAAGCTGTGCTCTGTGAAGCTGAACAAGGAGAGGGCGGTGAACGCTGGAGTGGTGAAGCCGCTGGTGGATCTTGTGGCGGAGCAAGGGACTGGTCTGGCGGAGAAGGCGATGGTGGTGCTCAACAGCTTGGCTGCGGTTCAGGATGGGAAGGATGCGATTGTGGAAGAAGGTGGGATAGCTGCTCTTGTGGAAGCCATTGAAGATGGGTCAGTGAAGGGGAAAGAGTTTGCTGTTTTGACACTTCTGCAGCTGTGTGTTGACAGTGTCAGGAACAGAGGGCTTCTTGTGAGAGAGGGTGGGATACCCCCTCTTGTTTCTCTTTCACAGTCTGGAACTCCTCGAGCTAAGCACAAGGCTGAAACTCTCCTGCGGTATTTGAGAGAATCAAGGCAAGAAGCATCATCTTCAGGTTCTTAG 1371 0.5624 MVSLEESRSNSSRFPLSQTFLHHHHHSSKTQRHIGRSMRTIRSNFFQDDNSSTCSFTEKSTCFSENLTDSVVDLRLGELATRSNKSHRSSFADEDLLDLSQAFSDFSACSSDISGELQRLATLPSPEYFPDAAGDENPQPEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSTSVNVKRSAAAKLRLLAKNRADNRVLIGESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLNDENKKLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENRSSIGASGAIPPLVSLLINGSSRGKKDALTTLYKLCSVKLNKERAVNAGVVKPLVDLVAEQGTGLAEKAMVVLNSLAAVQDGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVRNRGLLVREGGIPPLVSLSQSGTPRAKHKAETLLRYLRESRQEASSSGS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2502 456 PANTHER U BOX DOMAIN-CONTAINING 7 453 - -
Lja6g2502 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 211 253 IPR000225 GO:0005515
Lja6g2502 456 Gene3D - 313 454 IPR011989 -
Lja6g2502 456 Gene3D - 152 312 IPR011989 -
Lja6g2502 456 SUPERFAMILY ARM repeat 168 445 IPR016024 -
Lja6g2502 456 SMART arm_5 200 240 IPR000225 GO:0005515
Lja6g2502 456 SMART arm_5 364 404 IPR000225 GO:0005515
Lja6g2502 456 SMART arm_5 323 363 IPR000225 GO:0005515
Lja6g2502 456 SMART arm_5 241 281 IPR000225 GO:0005515
Lja6g2502 456 SMART arm_5 406 446 IPR000225 GO:0005515
Lja6g2502 456 SMART arm_5 282 322 IPR000225 GO:0005515
Lja6g2502 456 Pfam Armadillo/beta-catenin-like repeat 202 239 IPR000225 GO:0005515
Lja6g2502 456 Pfam Armadillo/beta-catenin-like repeat 284 322 IPR000225 GO:0005515
Lja6g2502 456 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 7 453 - -
Lja6g2502 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2502 Lja-Chr6 53910557 53913244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2502 81 455 U-box Gene Family AT2G23140 43.434 5.95e-88 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2502 - - lja:Lj6g3v1753130.1 834.328