Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2496 ATGGAAAATTTGATGACCCTAGATCACAAGCAGAAGATGGCATCGTTGGCGCCGCGTCTGCAGTTCTTCATTCGCATGATTCCGAATGGCAACTGCATAGTGATGCAAGGTTCTGCTGAAGAGAGCGTGAAATCGGTCTACCAAAGGGTCGAGAGTAGAACTAGAATTCCAATTCATGACCAGAGATTGATTCATGCAGGGAAGCAGCTCCGTTGGGAGCAAAGACTCGGTGATTGCGGCATCCAAAACGATGCCACCCTTCATTTGGTGGCCTACTTGCGCAGCGGAGGAGACATATCTCGACAACGTGTCGCGGTGGACGACATGTTGGACCTTTGGCACCTCTCCGATGAAGGGAGCAGTACTAAGGAACATTGCGTGAAAATGTTGTTCAAGCTTAACGCCTTGGACGATTTCATGTATAAAAGGGGTCTAAAGGGGCTGGTTAGTCTCTACCGGTCCGAATCATCACCTCACAAAGCCATGGCCGATTTCACCATCAGATTGTTCTTGGACGGTTGCAACTCCATGTTCAAGAAAGGTTTACATGCTTGTTGCCTTCGTACGGTGGCAGTGTTTTGTGATCTGCTTAGAATATATGCAGGGGATGATTGCGATCTTTACAATTCTTTTATGACTTGTCTCAGGATTGTGCTGGAGGAGTGTGTCGGTGATATAAATCCCAATCGGAAGGTTCTAGTTAAAAGTGTTTTGAATTATGTTGGTGAGAGTGTGAATTTGGTGTTAAGGGATTTGGATAGTTGTTTTAAGATCAAGATCCTTGAGTTATCGTTGATGTACAATTTCCAGAATCTGATTGCATTCTTAGTTTGTTTAAGGGATGCAATCAAGGTTAAGGGAATGCAAGCTTGGGAGACCCAGTCTGGGACTAATGAGGAAGATGATGAGGAACCATTGCTTGCAAATGAGATTTACCACCTTCGTCTTATGTACAGTAAATTATTATACAAAATGGAAGAAGGCTTTCAGAAAATTGAGGATGACTTGGATAACGTGAAACAATGGACTATGAAGTGGGTTCATTACTTTACGCTATTAAAGCATATGTCTGAACTCTCTAAGCTAATAGACGGTGCTGAAGAGATGTTTAGGGAATTTTTGATACACAGAGGGCGAAATTTGTCTGTGCTAGTTATTTTGTACACAACGAGAGGTGAGGGTCATGAGTGGATTTTGGAGCACAAAAGTGCGCTAAACTCCGCAGCTAGAAGGCAATTGGCAGTAAATTCATTTCCTAGTGAAGAGCATGGAGATGAGGAAACGCATCACATATTTATTGACCGGTCTAATCTACTTGCTGAATCTTTTCGTGAAATAGTGCACGCAAGGCTTGAAGCTTTGAGGTATGACCTTTCTGTAAATTTTTTGCATGAGGAAGGGGCAGGAGAGGGTGTGGAGAGGGAGTGGTTTATTTTGGTGTGTCAAGAAATATTTAATCCGCTAAATGCTCTTTTCGTGGCATGCCCAAATGACTGCAGAAGATTTTTCCCTAATCCTGATAACTTATGGACAATGAAGTTTAACTTAATATTCATCTACATGTCTGCAGCATCCAAAGTAAATCCTCTGCACCTTGAGTACTTCACCTTCTCTGGTCGCATTATTGCTTTAGCTTTGATGAATGAGGTGCAAGTGGGCATTGCTTTCGATCGTGTGTTTTTCAAGCAATTGGCTGGAGAGCATATTACTTTGGAAGATATACAGGAAGCAGATCCTTACATGTACAGAAGCTGCAAGAAAATATTAGAGATGGATGCAGATTTTGTTGATTCAGATGCTTTAGGACTTACATTTGCTTGGGAGGCGGAGGAATTAGGACACAAGAAAGTGATTGAGCTTTGTCCGGGTGGTGAGAGCCTTGTAGTGAATAGTAAGAACAGACAGAAGTATGTTGATCTTCTTATACAAAATCAATTTGTGTCATCCATCTCTGAGCAAGTATCACATTTTTCCAAGGGCTTTGGTGATATCATTTTCAACTCAAAGCTCCGACAGTTCTTCCAGATTTTAGATCTTAAAGATTTTGACAGGATGCTATATGGAGAAGAAAATGCAATTTCTGTTGAAGAATGGAAGGCAAAAACTGAGTATGTTGGCTATCGAAAGACTGATCCTCAGATATCTTGGTTTTGGGAGGTATGTAGGATACTAGCCTTGTCTTTACATATATGTCTTCCTTGA 2202 0.4178 MENLMTLDHKQKMASLAPRLQFFIRMIPNGNCIVMQGSAEESVKSVYQRVESRTRIPIHDQRLIHAGKQLRWEQRLGDCGIQNDATLHLVAYLRSGGDISRQRVAVDDMLDLWHLSDEGSSTKEHCVKMLFKLNALDDFMYKRGLKGLVSLYRSESSPHKAMADFTIRLFLDGCNSMFKKGLHACCLRTVAVFCDLLRIYAGDDCDLYNSFMTCLRIVLEECVGDINPNRKVLVKSVLNYVGESVNLVLRDLDSCFKIKILELSLMYNFQNLIAFLVCLRDAIKVKGMQAWETQSGTNEEDDEEPLLANEIYHLRLMYSKLLYKMEEGFQKIEDDLDNVKQWTMKWVHYFTLLKHMSELSKLIDGAEEMFREFLIHRGRNLSVLVILYTTRGEGHEWILEHKSALNSAARRQLAVNSFPSEEHGDEETHHIFIDRSNLLAESFREIVHARLEALRYDLSVNFLHEEGAGEGVEREWFILVCQEIFNPLNALFVACPNDCRRFFPNPDNLWTMKFNLIFIYMSAASKVNPLHLEYFTFSGRIIALALMNEVQVGIAFDRVFFKQLAGEHITLEDIQEADPYMYRSCKKILEMDADFVDSDALGLTFAWEAEELGHKKVIELCPGGESLVVNSKNRQKYVDLLIQNQFVSSISEQVSHFSKGFGDIIFNSKLRQFFQILDLKDFDRMLYGEENAISVEEWKAKTEYVGYRKTDPQISWFWEVCRILALSLHICLP* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2496 733 PRINTS Ubiquitin signature 52 72 IPR019956 -
Lja6g2496 733 PRINTS Ubiquitin signature 73 94 IPR019956 -
Lja6g2496 733 PRINTS Ubiquitin signature 31 51 IPR019956 -
Lja6g2496 733 SUPERFAMILY Ubiquitin-like 17 96 IPR029071 -
Lja6g2496 733 Pfam HECT-domain (ubiquitin-transferase) 479 721 IPR000569 GO:0004842
Lja6g2496 733 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 15 722 - -
Lja6g2496 733 ProSiteProfiles HECT domain profile. 450 720 IPR000569 GO:0004842
Lja6g2496 733 Gene3D Hect, E3 ligase catalytic domain 690 727 - -
Lja6g2496 733 Gene3D - 15 109 - -
Lja6g2496 733 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 15 722 - -
Lja6g2496 733 Pfam Ubiquitin family 23 91 IPR000626 GO:0005515
Lja6g2496 733 SMART hect_3 448 733 IPR000569 GO:0004842
Lja6g2496 733 SUPERFAMILY Hect, E3 ligase catalytic domain 427 721 IPR035983 GO:0004842
Lja6g2496 733 SMART ubq_7 20 92 IPR000626 GO:0005515
Lja6g2496 733 Gene3D Hect, E3 ligase catalytic domain 567 649 - -
Lja6g2496 733 Gene3D Hect, E3 ligase catalytic domains 427 673 - -
Lja6g2496 733 ProSiteProfiles Ubiquitin domain profile. 20 96 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2496 Lja-Chr6 53811278 53814898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2496 20 96 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.364 5.28e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2496 - - lja:Lj6g3v1754520.1 1134.4