Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2495 ATGACGATTGTCTGTGTAAACCTCTTCTCTATCAGTAGTCCAATGGCAAATTCGACGACGATTACGAACGCTGAAGCGACGTCGTCTCCGGCGGCGTCTCCGCCGTTGCGGTTCTTCGTTCGCTCGATGCCGATCAGCAACAGCTTTGTGTTGCATGGTTCGGAAGAAGACAGCGTGAAATCCGTTCACGAAAGGATCGAAAGCAGAACCGGAATCCCAATTCGCGAGCAGGTGTTGATCCACCAAGGGAAACAGCTCCGTTGGGAGCAGAATCTCGGCGAGTGCGGCATCCAAAACGACGCGAATCTTCAATTGGTGGGGCGGTTGCGCAGTGGAGGTTGCTCGGAGGAGGTGTATGCAGTGGTGGGCCAAATGGTTTCCCTCATCCGGCGTGTCTGCGGAGGGGAATTGGATCTCAGCGTTACGCCTATCATCGAGCATGTCATGAGCATACAGTTCATGGCGAAGCTCAACGCCTTTGACGTTTTGGTTGCATGCAAAGCTCCGGAGGCGCTGATCAAGCTTCGCCTGTCCTCCTTCTCAGGTAACCAGGACATTGCTGGTTCCGCCATAGCATTGTTTTTGGAATCTTGCCGCTATATGATTAGCAAAGGGTTGCATGCTTGTTGCCTTGGCGCGGTTGTGGAGTTTTGTAAACTGTTTACAGTACTAGTGGGGGGTAATGAGCCTTTGTTTATGAGTTGCTTGTCTTGTCTCCGGGGTACGTTGGAGGGTAATGGGGATCGAGATCCGAATCGGAGGGTTGTGCTTAAGGGTGTTTTTGATTATGTTTGTGAGCTTGTGGGTGTGTTGTTGAGGGAAATGGATTTGAGTACAAACCGTCCCGTGCCGTTTTTGCTGACCCGTTTTCAGGAACTGGTTGATTTTATAATCCCTTTGAGGAATGGAATCAGGGGGTTGCAAGCTTGGGAGGCTGTAATTGATGGGGAGGTACCCTCGCTCGCGAAAGAGGTTAACCACATTCGTTTTATGTATATGCAGTTATTGTCCAAAATGGATGGGTCCCTTCAGGCCATGGAGGATTGCTTGGCTAATAAGGAAGAAGGAAATAGAGGTGTTGCTGTTGCCGGTATGGGCTGGTCTCTGCATATTTCCTTGTTGAAGCGTTTGTATACAATCTCCAAGGCTAAGCTATATGACGGCGCTGAAGAGATGTTTTGGGGAGTTTTAATCCGTCGGAGAAACATGGTGTCACAGTTATTTCTTTGGTTTGTAAAGAGAACTGACGATCATCGGTGGATTCTTGAGCAGAAAAGCGCGACCAACTTTGAATGTAGGAGGCATTTGGCAATGATGTTGTTCCCTCATGTAAGACATGTCTATGGTATGGGGCATGAGATGCTTATTGACAGGTCTCGGCTACTAACTGATTCTTTTGAGTACATATCACATGCAAGTCCAGAATCTCTGCGAGCTGGTCTTTTAATGAAATTTCAGAAGGAGAACGCTACTGGACCGGGTGTGGTGAGGGAGTGGTTTCTTTTGGTGTGTCGAGAAATATTCAATCCGCTAAATGGTCTTTTTGTGGCATGCCCAAATGACCGCAAGAGATTTTTACCAAATCCTGCATCTAGCGTACATCCTCTGCACCTTGAGTACTTCAACTTCTCCGGTCGAATTATCGGTTTAGCTTTGATGAATGACGTGCAAGTGGGAATTGCTTTTGATCGTGTGTTTTTCAAGCAATTGGCTGGAGAACATATTACTTTCAAAGATATACAGAAAACAGATCCTTACCTGCACAGAAGCTGCAAGAAAATATTAGAGATGGATGCAGATTTTGTTGATTCAGATGCATTAGGACTGACATTTCTTAGGGAGGTGGAGGAATTAGGACACAGGAAAGTTATTGAGCTTTTCCCTGGTGGGGAAAGACACGTAGTGAATAGTAAGAATAGGGAGACATTTGTTAAACTTCTTATACATAATCAATTTGTGACATCCATATCTGAGCAGATATCGCATTTTAATAAGGGTTTTGCTGATATTCTTTCCAACTCAAAGCCGCAAGAGTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATCGGATGTTGCATGGGAGTGAAAATGTCATTTCTGTTGAAGATTGGAAGGCACACACTAAGTATAGAGGCTATAAAGAGACTGATGATCAGATATCTTGGTTTTGGGAGGTTGTTGGGAGAATGTCAGCAGAACAAATGAAGACTCTTCTATTCTTTTGGACATCTGTGAAATATTTACCCTTTGAAGGTTTCGCTGGTTTGAAATCTTGTTTATTCATTTGTAGATCCGAGGAACCTGATGATCATCTACCCTCATCTCACACATGCTTTTACCAACTTTGTTTCCCCCCTTATTCATCTATGGCCGTCATGCAAGATCGGTTTAAAGTCATCACTCAAGAACACATCAGTTGCAGTTTCGGTGCTCTGTGA 2439 0.4522 MTIVCVNLFSISSPMANSTTITNAEATSSPAASPPLRFFVRSMPISNSFVLHGSEEDSVKSVHERIESRTGIPIREQVLIHQGKQLRWEQNLGECGIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSLIRRVCGGELDLSVTPIIEHVMSIQFMAKLNAFDVLVACKAPEALIKLRLSSFSGNQDIAGSAIALFLESCRYMISKGLHACCLGAVVEFCKLFTVLVGGNEPLFMSCLSCLRGTLEGNGDRDPNRRVVLKGVFDYVCELVGVLLREMDLSTNRPVPFLLTRFQELVDFIIPLRNGIRGLQAWEAVIDGEVPSLAKEVNHIRFMYMQLLSKMDGSLQAMEDCLANKEEGNRGVAVAGMGWSLHISLLKRLYTISKAKLYDGAEEMFWGVLIRRRNMVSQLFLWFVKRTDDHRWILEQKSATNFECRRHLAMMLFPHVRHVYGMGHEMLIDRSRLLTDSFEYISHASPESLRAGLLMKFQKENATGPGVVREWFLLVCREIFNPLNGLFVACPNDRKRFLPNPASSVHPLHLEYFNFSGRIIGLALMNDVQVGIAFDRVFFKQLAGEHITFKDIQKTDPYLHRSCKKILEMDADFVDSDALGLTFLREVEELGHRKVIELFPGGERHVVNSKNRETFVKLLIHNQFVTSISEQISHFNKGFADILSNSKPQEFFQSLELEDLDRMLHGSENVISVEDWKAHTKYRGYKETDDQISWFWEVVGRMSAEQMKTLLFFWTSVKYLPFEGFAGLKSCLFICRSEEPDDHLPSSHTCFYQLCFPPYSSMAVMQDRFKVITQEHISCSFGAL* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2495 812 SUPERFAMILY Hect, E3 ligase catalytic domain 437 797 IPR035983 GO:0004842
Lja6g2495 812 CDD HECTc 452 810 IPR000569 GO:0004842
Lja6g2495 812 Gene3D Hect, E3 ligase catalytic domain 696 811 - -
Lja6g2495 812 Gene3D Hect, E3 ligase catalytic domain 573 655 - -
Lja6g2495 812 SUPERFAMILY Ubiquitin-like 27 113 IPR029071 -
Lja6g2495 812 ProSiteProfiles Ubiquitin domain profile. 36 112 IPR000626 GO:0005515
Lja6g2495 812 ProSiteProfiles HECT domain profile. 473 812 IPR000569 GO:0004842
Lja6g2495 812 SMART ubq_7 36 108 IPR000626 GO:0005515
Lja6g2495 812 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 22 809 - -
Lja6g2495 812 Pfam Ubiquitin family 39 110 IPR000626 GO:0005515
Lja6g2495 812 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 22 809 - -
Lja6g2495 812 Pfam HECT-domain (ubiquitin-transferase) 502 803 IPR000569 GO:0004842
Lja6g2495 812 Gene3D - 33 122 - -
Lja6g2495 812 SMART hect_3 471 810 IPR000569 GO:0004842
Lja6g2495 812 Gene3D Hect, E3 ligase catalytic domains 455 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2495 Lja-Chr6 53792699 53800510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2495 36 112 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 33.766 1.05e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2495 - - lja:Lj0g3v0358289.1 1057.36