Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2478 ATGGCGGGTTCATGTTTCTACGGGCTTCGCCTGAGGAGATCAAAGAGCAAACCATTACAAGACCCTTCATCTTCATCAAGGAACCGGTTGAATCCCGACATGGAGAACATGGAAAGGAGGAGATTTGACAGCATGGAATCATGGTCCATGATATTGGACTCTGAGAATTTGGATACATGGGAGACTTCAAAAGAGGACCAGGAAGAATGGACTGCAGATTTATCACAGCTTTTCATTGGTAACAAGTTTGCTTCCGGTGCTCACAGCAGGATTTACCGTGGAATCTACAAGCAGAGAGCGGTTGCTGTGAAAATGGTGAGGATTCCAAATCAGAATGAGGAGAGAAGAGTGTTGCTGGAGCAACAGTTCAAGTCTGAAGTGGCTTTGCTTTCTCGTCTGGTTCATCGTAATATAGTGCAGTTTATTGCAGCATGTAAAAAACCGCCAGTGTACTGTATCATAACTGAATACATGTCACAAGGAACGCTGAGAATGTATCTGAACAAGAAAGAGCCATACTCCCTTTCAATAGAAACAGTACTGAGGTTAGCTCTTGACATATCTAGGGGAATGGAGTACCTTCATTCACAAGGTGTGATTCACAGAGACCTCAAGTCAAATAACTTGCTTCTCAATGATGAAATGAGGGTTAAGGTAGCAGATTTTGGCACATCATGTCTTGAAACAAGATGCAGGGAAACCAAAGGAAACATGGGAACATATCGTTGGATGGCGCCAGAGATGATTAAGGGAAAACCTTATACTCGTAAAGTCGATGTGTATAGCTTTGGTATTGTGCTTTGGGAGCTCATAACTGCTCTACTTCCCTTTCAAGGAATGACACCAGTGCAAGCTGCTTTTGCTGTGTCTGAGAAGAATGAGAGGCCTCCACTGCCAGCTAGTTGTCAACCCGCACTAGCACATCTGATAAAGCGATGCTGGGCAGTAAATCCCTCAAAGAGGCCAGATTTCAGTGAGATAGTGAGTTCATTGGAGAAGTACGACGAGTGTGTGAAGGAAGGGCTACCTTTAACTCATCATTCAGTGTTAGTCACCAAAAATGTAATTATTCAACGTCTTAAAGGCTGTGTATCCATCACCTCCTCCATACCTGTACCTGCTTAA 1125 0.4373 MAGSCFYGLRLRRSKSKPLQDPSSSSRNRLNPDMENMERRRFDSMESWSMILDSENLDTWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEERRVLLEQQFKSEVALLSRLVHRNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETVLRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKGKPYTRKVDVYSFGIVLWELITALLPFQGMTPVQAAFAVSEKNERPPLPASCQPALAHLIKRCWAVNPSKRPDFSEIVSSLEKYDECVKEGLPLTHHSVLVTKNVIIQRLKGCVSITSSIPVPA* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2478 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lja6g2478 374 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 362 - -
Lja6g2478 374 SUPERFAMILY Protein kinase-like (PK-like) 54 331 IPR011009 -
Lja6g2478 374 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 362 - -
Lja6g2478 374 Pfam Protein tyrosine and serine/threonine kinase 79 331 IPR001245 GO:0004672|GO:0006468
Lja6g2478 374 ProSiteProfiles Protein kinase domain profile. 77 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2478 374 SMART serkin_6 77 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2478 374 MobiDBLite consensus disorder prediction 14 36 - -
Lja6g2478 374 Gene3D Phosphorylase Kinase; domain 1 66 159 - -
Lja6g2478 374 CDD STKc_MAP3K-like 84 331 - -
Lja6g2478 374 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672|GO:0006468
Lja6g2478 374 PRINTS Tyrosine kinase catalytic domain signature 239 249 IPR001245 GO:0004672|GO:0006468
Lja6g2478 374 PRINTS Tyrosine kinase catalytic domain signature 193 211 IPR001245 GO:0004672|GO:0006468
Lja6g2478 374 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672|GO:0006468
Lja6g2478 374 PRINTS Tyrosine kinase catalytic domain signature 155 168 IPR001245 GO:0004672|GO:0006468
Lja6g2478 374 Gene3D Transferase(Phosphotransferase) domain 1 160 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2478 Lja-Chr6 53690366 53694716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2478 1 365 MAP Kinase Kinase Kinase AT1G62400 82.447 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja6g2478 PK_Tyr_Ser-Thr 7.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2478 - - gmx:100799437 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4306 4 76660437 76664281 Lja6g2478 6 53690366 53694716 PCT